Rosetta 3.4
Public Member Functions | Protected Attributes
protocols::frag_picker::scores::ProfileScore Class Reference

a fragment candidate More...

#include <ProfileScore.hh>

Inheritance diagram for protocols::frag_picker::scores::ProfileScore:
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List of all members.

Public Member Functions

 ProfileScore (Size priority, Real lowest_acceptable_value, bool use_lowest, sequence::SequenceProfileOP query_profile, sequence::ScoringSchemeOP profile_scoring, Size longest_vall_chunk)
 ~ProfileScore ()
void do_caching (VallChunkOP)
void clean_up ()
bool cached_score (FragmentCandidateOP, FragmentScoreMapOP)
bool describe_score (FragmentCandidateOP f, FragmentScoreMapOP empty_map, std::ostream &out)

Protected Attributes

Matrix scores_

Detailed Description

a fragment candidate


Constructor & Destructor Documentation

protocols::frag_picker::scores::ProfileScore::ProfileScore ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
sequence::SequenceProfileOP  query_profile,
sequence::ScoringSchemeOP  profile_scoring,
Size  longest_vall_chunk 
) [inline]

References scores_.

protocols::frag_picker::scores::ProfileScore::~ProfileScore ( )

Member Function Documentation

bool protocols::frag_picker::scores::ProfileScore::cached_score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]
void protocols::frag_picker::scores::ProfileScore::clean_up ( ) [inline, virtual]
bool protocols::frag_picker::scores::ProfileScore::describe_score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map,
std::ostream &  out 
)
void protocols::frag_picker::scores::ProfileScore::do_caching ( VallChunkOP  chunk) [virtual]

Member Data Documentation

Referenced by ProfileScore().


The documentation for this class was generated from the following files:
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