Rosetta 3.4
Public Member Functions | Static Public Member Functions
protocols::protein_interface_design::movers::DisulfideMover Class Reference

#include <DisulfideMover.hh>

Inheritance diagram for protocols::protein_interface_design::movers::DisulfideMover:
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Collaboration diagram for protocols::protein_interface_design::movers::DisulfideMover:
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List of all members.

Public Member Functions

 DisulfideMover ()
 default ctor
 DisulfideMover (DisulfideMover const &dm)
 copy ctor
 DisulfideMover (core::Size targetResidue)
 Constructor with a single target residue.
 DisulfideMover (utility::vector1< core::Size > const &targetResidues)
 Constructor with multiple target residues.
virtual ~DisulfideMover ()
virtual void apply (core::pose::Pose &pose)
 a dummy apply so that instantiation of this baseclass would be possible.
virtual std::string get_name () const
 Each derived class must specify its name. The class name.
virtual protocols::moves::MoverOP clone () const
 clone has to be overridden only if clone invocation is expected.
virtual protocols::moves::MoverOP fresh_instance () const
 this is like clone(), except it generates a new mover object freshly created with the default ctor. This function _should_ be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage).
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 Reinitialize this Mover with parameters from the specified tags.

Static Public Member Functions

static void disulfide_list (core::pose::Pose const &pose, utility::vector1< core::Size > const &targets, Size rb_jump, utility::vector1< std::pair< core::Size, core::Size > > &disulfides)
 Find all residues which could disulfide bond to a target.

Constructor & Destructor Documentation

protocols::protein_interface_design::movers::DisulfideMover::DisulfideMover ( )

default ctor

Referenced by clone().

protocols::protein_interface_design::movers::DisulfideMover::DisulfideMover ( DisulfideMover const &  dm)

copy ctor

protocols::protein_interface_design::movers::DisulfideMover::DisulfideMover ( core::Size  targetResidue)

Constructor with a single target residue.

References protocols::simple_moves::DesignRepackMover::target_residues_.

protocols::protein_interface_design::movers::DisulfideMover::DisulfideMover ( utility::vector1< core::Size > const &  targetResidues)

Constructor with multiple target residues.

References protocols::simple_moves::DesignRepackMover::target_residues_.

protocols::protein_interface_design::movers::DisulfideMover::~DisulfideMover ( ) [virtual]

Member Function Documentation

void protocols::protein_interface_design::movers::DisulfideMover::apply ( core::pose::Pose ) [virtual]
virtual protocols::moves::MoverOP protocols::protein_interface_design::movers::DisulfideMover::clone ( ) const [inline, virtual]

clone has to be overridden only if clone invocation is expected.

clone is meant to return an OP'ed deep copy of this object. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function.

Implements protocols::simple_moves::DesignRepackMover.

References DisulfideMover().

void protocols::protein_interface_design::movers::DisulfideMover::disulfide_list ( core::pose::Pose const &  pose,
utility::vector1< core::Size > const &  targets,
Size  rb_jump,
utility::vector1< std::pair< core::Size, core::Size > > &  disulfides 
) [static]
virtual protocols::moves::MoverOP protocols::protein_interface_design::movers::DisulfideMover::fresh_instance ( ) const [inline, virtual]

this is like clone(), except it generates a new mover object freshly created with the default ctor. This function _should_ be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage).

fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.

Implements protocols::simple_moves::DesignRepackMover.

std::string protocols::protein_interface_design::movers::DisulfideMover::get_name ( ) const [virtual]

Each derived class must specify its name. The class name.

Reimplemented from protocols::simple_moves::DesignRepackMover.

References protocols::protein_interface_design::movers::DisulfideMoverCreator::mover_name().

void protocols::protein_interface_design::movers::DisulfideMover::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
protocols::filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &  pose 
) [virtual]

The documentation for this class was generated from the following files:
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