Rosetta 3.4
Public Types | Public Member Functions
core::kinematics::MoveMap Class Reference

A class specifying DOFs to be flexible or fixed. More...

#include <MoveMap.hh>

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List of all members.

Public Types

typedef id::AtomID AtomID
typedef id::AtomID_Mask AtomID_Mask
typedef id::DOF_Type DOF_Type
typedef id::DOF_ID DOF_ID
typedef id::DOF_ID_Mask DOF_ID_Mask
typedef id::TorsionType TorsionType
typedef id::TorsionID TorsionID
typedef std::pair< Size,
TorsionType
MoveMapTorsionID
 Our own specific torsion_id TorsionType can BB, CHI and JUMP. Thefore it doesnt distinguish torsion,eg phi/psi/omega in BB torsion. Useful when setting residue k backbone fixed. should probably make this a class/struct.
typedef std::map< TorsionType,
bool
TorsionTypeMap
 flexible or fixed for this TorsionType (BB, CHI, JUMP), for all residues
typedef std::map
< MoveMapTorsionID, bool
MoveMapTorsionID_Map
 flexible or fixed for this TorsionType (BB, CHI, JUMP), for one residue, eg no distinction betwen phi/psi/omega
typedef std::map< TorsionID, boolTorsionID_Map
 flexible or fixed for a single torsion, eg, psi (BB torsion 2) of residue 10
typedef std::map< DOF_Type, boolDOF_TypeMap
 flexible or fixed for this DOF_Type (PHI, THETA, D, RB1-6), for all atoms
typedef std::map< DOF_ID, boolDOF_ID_Map
 flexible or fixed for a single DOF, eg, D of atom 5 in residue 10
typedef std::map< id::JumpID,
bool
JumpID_Map
 flexible or fixed jumps (fold-tree independent definition via residue pairs )

Public Member Functions

 MoveMap ()
 default constructor
MoveMapOP clone () const
void clear ()
 clear -- sets all to FALSE
void set_bb (bool const setting)
 Set whether or not BB TorsionType is moveable.
void set_bb (Size const seqpos, bool const setting)
 Sets whether or not the BB torsions of residue <seqpos> are movable.
void set_bb (utility::vector1< bool > allow_bb)
 Sets BB torsions movable based on input array.
void set_bb_true_range (Size const begin, Size const end)
 Sets the BB torsions between residues <begin> and <end> as movable, all other residues are non-movable.
void set_ranges_unmodifiable (const std::vector< std::pair< Size, Size > > &ranges)
 Prevents backbone torsion modifications to the intervals specified by <ranges>. Each element of the vector is a pair, which specifies the begin and end indices. Counting begins with 1.
void set_chi (bool const setting)
 Sets whether of not CHI TorsionType is movable.
void set_chi (Size const seqpos, bool const setting)
 Sets whether or not the CHI torsions of residue <seqpos> are movable.
void set_chi (utility::vector1< bool > allow_chi)
 set CHI torsions movable based on input array
void set_chi_true_range (Size const begin, Size const end)
 Sets the chi torsions between residues <begin> and <end> as movable and all other residues are non-movable.
void set_jump (bool const setting)
 Sets whether or not JUMP TorsionType is moveable.
void set_jump (int const jump_number, bool const setting)
 Sets the movability of JUMP <jump_number> to <setting>
void set_jump (Size const pos1, Size const pos2, bool const setting)
 set JUMP moveable or not for one specific residue pair this mechanism does not mix with the "jump_nr" mechanism... i.e., if you set jump_nr 3 = movable ---> movemap does not know that this refers to say residue 23-89
void set_jump (id::JumpID const &jump, bool const setting)
 set/get for JumpIDs --- fold-tree independent definition of jumps
void set (TorsionType const &t, bool const setting)
 set a specific TorsionType moveable; currently BB, CHI, or JUMP
void set (MoveMapTorsionID const &id, bool const setting)
 set TorsionType flexible or fixed for one residue, eg BB torsions for residue 10
void set (TorsionID const &id, bool const setting)
 set an individual Torsion moveable or now, eg, "BB torsion 2 of residue 4"
void set (DOF_Type const &t, bool const setting)
 set atom tree DOF, eg D, PHI, THETA
void set (DOF_ID const &id, bool const setting)
 set for an individual dof, eg "PHI of Atom 3 in Residue 5"
bool get_bb (Size const seqpos) const
 Returns if BB torsions are movable or not for residue <seqpos>
bool get_chi (int const seqpos) const
 Returns if SC torsions are movable or not for residue <seqpos>
bool get_jump (int const jump_number) const
 Returns if JUMP <jump_number> is movable or not.
bool get_jump (Size const pos1, Size const pos2) const
bool get_jump (id::JumpID const &jump) const
bool get (TorsionType const &t) const
 get setting for a specific TorsionType, such as "BB"
bool get (MoveMapTorsionID const &id) const
 get TorsionType flexible or fixed for one residue, eg BB torsions for residue 10
bool get (TorsionID const &id) const
bool get (DOF_Type const &t) const
 get the default for this type of DOF, eg "PHI"
bool get (DOF_ID const &id) const
 get the setting for an individual dof, eg, PHI of Atom 3 in Residue 5
TorsionTypeMap::const_iterator find (TorsionType const &t) const
 find the explicit setting for the given TorsionType
MoveMapTorsionID_Map::const_iterator find (MoveMapTorsionID const &id) const
 find the explicit setting for the given MoveMapTorsionID
TorsionID_Map::const_iterator find (TorsionID const &id) const
 find the explicit setting for the given TorsionID
JumpID_Map::const_iterator find (id::JumpID const &jump) const
 find the explicit setting for the given JumpID
DOF_TypeMap::const_iterator find (DOF_Type const &t) const
 find the explicit setting for the given DOF_Type
DOF_ID_Map::const_iterator find (DOF_ID const &id) const
 find the explicit setting for the given DOF_ID
TorsionTypeMap::const_iterator torsion_type_begin () const
 return an iterator pointing just past the last element of the TorsionTypeMap
TorsionTypeMap::const_iterator torsion_type_end () const
 return an iterator pointing at the first element of the TorsionTypeMap
MoveMapTorsionID_Map::const_iterator movemap_torsion_id_begin () const
 return an iterator pointing at the first element of the MoveMapTorsionID_Map
MoveMapTorsionID_Map::const_iterator movemap_torsion_id_end () const
 return an iterator pointing just past the last element of the MoveMapTorsionID_Map
TorsionID_Map::const_iterator torsion_id_begin () const
 return an iterator pointing at the first element of the TorsionID_Map
TorsionID_Map::const_iterator torsion_id_end () const
 return an iterator pointing just past the last element of the TorsionID_Map
DOF_TypeMap::const_iterator dof_type_begin () const
 return an iterator pointing just past the last element of the DOF_TypeMap
DOF_TypeMap::const_iterator dof_type_end () const
 return an iterator pointing at the first element of the DOF_TypeMap
DOF_ID_Map::const_iterator dof_id_begin () const
 return an iterator pointing at the first element of the DOF_ID_Map
DOF_ID_Map::const_iterator dof_id_end () const
 return an iterator pointing just past the last element of the DOF_ID_Map
JumpID_Map::const_iterator jump_id_begin () const
 return an iterator pointing at the first element of the JumpID_Map
JumpID_Map::const_iterator jump_id_end () const
 return an iterator pointing just past the last element of the JumpID_Map
Size import (MoveMap const &rval)
 import settings from another MoveMap
Size import_false (MoveMap const &rval)
 import only False settings from another MoveMap
Size import_true (MoveMap const &rval)
 import only True settings from another MoveMap
void init_from_file (std::string const &filename)
 Read MoveMap from file.
void show (std::ostream &out, Size i) const
 gives the BB and CHI bool values up to a given residue number
void show (Size i) const
 gives the BB and CHI bool values up to a given residue number wrapper for PyRosetta

Detailed Description

A class specifying DOFs to be flexible or fixed.

currently there are two groups of data, one is residue-based Torsion definition, such as BB, CHI and JUMP; the other is atom-based DOF definition, such as bond length D, bond angle THETA and torsion angle PHI which are used in atom-tree. MoveMap does not automatically handle conversion from one group to the other, i.e., setting PHI false for DOF_type does not affect setting for BB and CHI torsion though they are PHIs in atom-tree.

within each group, there are multiple levels of control (from general/high to specific/lower):

setting for each level are stored in a map structure and they are only added to the map when setting methods are invoked. As a result, MoveMap does not behave like a "Boolean vector" which always contains setting for each residue or atom in a conformation. Setting for a higher level will override setting for lower levels (remove it from map); Similarly, when querying a lower level finds no setting, it will check setting for its higher level. For example, setting TorisionType BB to be true will remove any data of BB setting for a residue or a specific BB torsion ( such as backbone psi ) in a residue. And querying setting for BB torsion 2 of residue 4 will first check if there is any specific setting, if not, check if there is a setting for all BB torsions for residue 4, if not again, use setting for BB torsions for all residues.

example: movemap = MoveMap() See also: Pose MinMover ShearMover SmallMover


Member Typedef Documentation

flexible or fixed for a single DOF, eg, D of atom 5 in residue 10

flexible or fixed for this DOF_Type (PHI, THETA, D, RB1-6), for all atoms

flexible or fixed jumps (fold-tree independent definition via residue pairs )

Our own specific torsion_id TorsionType can BB, CHI and JUMP. Thefore it doesnt distinguish torsion,eg phi/psi/omega in BB torsion. Useful when setting residue k backbone fixed. should probably make this a class/struct.

flexible or fixed for this TorsionType (BB, CHI, JUMP), for one residue, eg no distinction betwen phi/psi/omega

flexible or fixed for a single torsion, eg, psi (BB torsion 2) of residue 10

flexible or fixed for this TorsionType (BB, CHI, JUMP), for all residues


Constructor & Destructor Documentation

core::kinematics::MoveMap::MoveMap ( ) [inline]

default constructor

Referenced by clone().


Member Function Documentation

void core::kinematics::MoveMap::clear ( )

clear -- sets all to FALSE

all internal map data are cleared.

Referenced by protocols::protein_interface_design::movers::PrepackMover::apply().

MoveMapOP core::kinematics::MoveMap::clone ( ) const [inline]
DOF_ID_Map::const_iterator core::kinematics::MoveMap::dof_id_begin ( ) const [inline]

return an iterator pointing at the first element of the DOF_ID_Map

Referenced by core::pose::setup_dof_mask_from_move_map().

DOF_ID_Map::const_iterator core::kinematics::MoveMap::dof_id_end ( ) const [inline]

return an iterator pointing just past the last element of the DOF_ID_Map

Referenced by core::pose::setup_dof_mask_from_move_map().

DOF_TypeMap::const_iterator core::kinematics::MoveMap::dof_type_begin ( ) const [inline]

return an iterator pointing just past the last element of the DOF_TypeMap

DOF_TypeMap::const_iterator core::kinematics::MoveMap::dof_type_end ( ) const [inline]

return an iterator pointing at the first element of the DOF_TypeMap

MoveMap::MoveMapTorsionID_Map::const_iterator core::kinematics::MoveMap::find ( MoveMapTorsionID const &  id) const

find the explicit setting for the given MoveMapTorsionID

Returns:
iterator pointing to the MoveMapTorsionID-bool pair, otherwise movemap_torsion_id_end()
Warning:
Do not use this for general lookup, as it does not take into account the stringency levels. Only use this when you need to check if a setting explicitly exists.
MoveMap::TorsionID_Map::const_iterator core::kinematics::MoveMap::find ( TorsionID const &  id) const

find the explicit setting for the given TorsionID

Returns:
iterator pointing to the TorsionID-bool pair, otherwise torsion_id_end()
Warning:
Do not use this for general lookup, as it does not take into account the stringency levels. Only use this when you need to check if a setting explicitly exists.
MoveMap::JumpID_Map::const_iterator core::kinematics::MoveMap::find ( id::JumpID const &  jump) const

find the explicit setting for the given JumpID

Returns:
iterator pointing to the JumpID-bool pair, otherwise jump_id_end()
Warning:
Do not use this for general lookup, as it does not take into account the stringency levels. Only use this when you need to check if a setting explicitly exists.
MoveMap::DOF_TypeMap::const_iterator core::kinematics::MoveMap::find ( DOF_Type const &  t) const

find the explicit setting for the given DOF_Type

Returns:
iterator pointing to the DOF_Type-bool pair, otherwise dof_type_end()
Warning:
Do not use this for general lookup, as it does not take into account the stringency levels. Only use this when you need to check if a setting explicitly exists.
MoveMap::DOF_ID_Map::const_iterator core::kinematics::MoveMap::find ( DOF_ID const &  id) const

find the explicit setting for the given DOF_ID

Returns:
iterator pointing to the DOF_ID-bool pair, otherwise dof_id_end()
Warning:
Do not use this for general lookup, as it does not take into account the stringency levels. Only use this when you need to check if a setting explicitly exists.
MoveMap::TorsionTypeMap::const_iterator core::kinematics::MoveMap::find ( TorsionType const &  t) const

find the explicit setting for the given TorsionType

Returns:
iterator pointing to the TorsionType-bool pair, otherwise torsion_type_end()
Warning:
Do not use this for general lookup, as it does not take into account the stringency levels. Only use this when you need to check if a setting explicitly exists.
bool core::kinematics::MoveMap::get ( MoveMapTorsionID const &  id) const

get TorsionType flexible or fixed for one residue, eg BB torsions for residue 10

get TorsionType flexible or fixed for one residue, eg BB torsions for residue 10 if no setting for this MoveMapTorsionID, use the setting for the TorsionType to which this MoveMapTorsionID belongs to.

References core::scoring::hbonds::t().

bool core::kinematics::MoveMap::get ( TorsionType const &  t) const
bool core::kinematics::MoveMap::get ( DOF_Type const &  type) const

get the default for this type of DOF, eg "PHI"

get setting for this type of DOF, eg "PHI" return false if no setting has been set to this DOF_type

bool core::kinematics::MoveMap::get ( TorsionID const &  id) const

get an individual torsion movable or not, eg BB torsion 2 of residue 4 if no setting for this specific TorsionID, use setting for the MoveMapTorsionID. eg, no setting for BB torsion 2 of residue 4, check setting for BB torsions of residue 4; if still not set, use setting for BB torsion type.

bool core::kinematics::MoveMap::get ( DOF_ID const &  id) const

get the setting for an individual dof, eg, PHI of Atom 3 in Residue 5

get the setting for an individual dof, eg, PHI of Atom 3 in Residue 5 if no setting for this specific DOF_ID, get setting for the DOF type to which this DOF_ID belongs to.

bool core::kinematics::MoveMap::get_bb ( Size const  seqpos) const [inline]
bool core::kinematics::MoveMap::get_chi ( int const  seqpos) const [inline]
bool core::kinematics::MoveMap::get_jump ( int const  jump_number) const [inline]
bool core::kinematics::MoveMap::get_jump ( Size const  pos1,
Size const  pos2 
) const [inline]

References get_jump().

bool core::kinematics::MoveMap::get_jump ( id::JumpID const &  jump) const

References core::id::JUMP.

Size core::kinematics::MoveMap::import ( MoveMap const &  rval) [inline]

import settings from another MoveMap

Returns:
The total number of settings imported.
Remarks:
This function calls set() for each setting that exists in the 'rval' MoveMap in order from lowest to highest stringency.
Size core::kinematics::MoveMap::import_false ( MoveMap const &  rval) [inline]

import only False settings from another MoveMap

Returns:
The total number of settings imported.
Remarks:
This function calls set() for each setting that is marked as False in the 'rval' MoveMap in order from lowest to highest stringency.

Referenced by protocols::forge::remodel::RemodelLoopMover::enforce_false_movemap().

Size core::kinematics::MoveMap::import_true ( MoveMap const &  rval) [inline]

import only True settings from another MoveMap

Returns:
The total number of settings imported.
Remarks:
This function calls set() for each setting that is marked as True in the 'rval' MoveMap in order from lowest to highest stringency.
void core::kinematics::MoveMap::init_from_file ( std::string const &  filename)

Read MoveMap from file.

reads lines of format and set movemap RESIDUE * CHI # set all residues chi movable RESIDUE 36 48 BBCHI # set res 36-48 bb & chi movable RESIDUE 89 NO # set res 89 unmovable JUMP * NO # set all jumps unmovable JUMP 1 YES # set jump 1 movable If a residue/default is not specified, mm defaults to current value. If a value for a jum is not given (e.g. "JUMP 4\n"), it defaults to movable (YES) Setting 'CHI' implies BB not movable, thus don't do: RESIDUE * CHI RESIDUE * BB Instead: RESIDUE * BBCHI

References core::io::pdb::split().

Referenced by protocols::canonical_sampling::MetropolisHastingsMover::add_shear_mover(), protocols::canonical_sampling::MetropolisHastingsMover::add_small_mover(), and protocols::canonical_sampling::canonical_sampling_main().

JumpID_Map::const_iterator core::kinematics::MoveMap::jump_id_begin ( ) const [inline]

return an iterator pointing at the first element of the JumpID_Map

Referenced by protocols::swa::rna::Output_movemap().

JumpID_Map::const_iterator core::kinematics::MoveMap::jump_id_end ( ) const [inline]

return an iterator pointing just past the last element of the JumpID_Map

Referenced by protocols::swa::rna::Output_movemap().

MoveMapTorsionID_Map::const_iterator core::kinematics::MoveMap::movemap_torsion_id_begin ( ) const [inline]

return an iterator pointing at the first element of the MoveMapTorsionID_Map

Referenced by protocols::forge::build::SegmentInsert::insert_pose_torsion_override_movemap().

MoveMapTorsionID_Map::const_iterator core::kinematics::MoveMap::movemap_torsion_id_end ( ) const [inline]

return an iterator pointing just past the last element of the MoveMapTorsionID_Map

Referenced by protocols::forge::build::SegmentInsert::insert_pose_torsion_override_movemap().

void core::kinematics::MoveMap::set ( TorsionType const &  t,
bool const  setting 
)
void core::kinematics::MoveMap::set ( MoveMapTorsionID const &  id,
bool const  setting 
)

set TorsionType flexible or fixed for one residue, eg BB torsions for residue 10

set TorsionType flexible or fixed for one residue, eg BB torsions for residue 10 setting this MoveMapTorsionID will clear data for individual TorsionID for this residue with this TorsionType.

void core::kinematics::MoveMap::set ( TorsionID const &  id,
bool const  setting 
)

set an individual Torsion moveable or now, eg, "BB torsion 2 of residue 4"

set an individual Torsion movalbe or now, eg, "BB torsion 2 of residue 4"

void core::kinematics::MoveMap::set ( DOF_Type const &  t,
bool const  setting 
)

set atom tree DOF, eg D, PHI, THETA

brief set for this type of DOF, eg "PHI" setting this DOF type will also clear setting for individual DOF_ID of this type in order to keep these two maps in sync,(query DOF_ID setting will turn to DOF_type setting now)

References core::scoring::hbonds::t().

void core::kinematics::MoveMap::set ( DOF_ID const &  id,
bool const  setting 
)

set for an individual dof, eg "PHI of Atom 3 in Residue 5"

void core::kinematics::MoveMap::set_bb ( bool const  setting) [inline]

Set whether or not BB TorsionType is moveable.

example: movemap.set_bb(True) See also: MoveMap MoveMap.set_chi Pose MinMover ShearMover SmallMover

References core::id::BB.

Referenced by protocols::simple_moves::ProlineFixMover::apply(), protocols::simple_filters::SAXSScoreFilter::apply(), protocols::comparative_modeling::hybridize::CartesianHybridize::apply(), protocols::abinitio::ResolutionSwitcher::apply(), protocols::idealize::basic_idealize(), protocols::nonlocal::BiasedFragmentMover::BiasedFragmentMover(), protocols::loophash::LoopHashSampler::build_structures(), protocols::abinitio::TemplateJumpSetup::clean_jumps(), protocols::loophash::LoopHashSampler::close_gaps(), protocols::swa::Figure_out_moving_residues(), protocols::relax::fix_worst_bad_ramas(), protocols::swa::rna::floating_base_chain_closure_post_process(), protocols::swa::rna::floating_base_chain_closure_setup(), protocols::topology_broker::JumpClaimer::generate_claims(), protocols::loophash::LoopHashLibrary::get_all(), protocols::loophash::LoopHashLibrary::graft_loop(), protocols::topology_broker::JumpClaimer::init_jumps(), protocols::toolbox::pose_metric_calculators::RotamerBoltzCalculator::init_minmover(), protocols::topology_broker::FragmentClaimer::initialize_dofs(), protocols::loops::loops_set_move_map(), core::optimization::symmetry::SymAtomTreeMinimizer::make_assymetric_movemap(), protocols::loophash::LocalInserter_SimpleMin::make_local_bb_change(), protocols::loophash::LocalInserter_SimpleMin::make_local_bb_change_close_gaps(), core::pose::symmetry::make_symmetric_movemap(), protocols::forge::remodel::RemodelLoopMover::mark_loop_moveable(), protocols::swa::rna::minimize_all_sampled_floating_bases(), protocols::simple_moves::ShakeStructureMover::minimize_with_constraints(), MinimizeInterface(), protocols::cartesian::MolecularDynamics::MolecularDynamics(), protocols::forge::build::SegmentSwap::movemap(), protocols::forge::build::SegmentRebuild::movemap(), protocols::forge::build::SegmentInsert::movemap(), protocols::forge::build::GrowRight::movemap(), protocols::forge::build::GrowLeft::movemap(), protocols::forge::build::ConnectRight::movemap(), protocols::forge::build::Bridge::movemap(), core::fragment::FragSet::region_all(), protocols::loops::select_loop_frags(), set_bb_true_range(), protocols::loops::set_move_map_for_centroid_loop(), core::optimization::CartesianMinimizerMap::setup(), protocols::rbsegment_relax::setup_pose_from_rbsegs(), protocols::surface_docking::CentroidRelaxMover::setupMovers(), SymMinimizeInterface(), and protocols::topology_broker::BBClaim::toggle().

void core::kinematics::MoveMap::set_bb ( Size const  seqpos,
bool const  setting 
) [inline]

Sets whether or not the BB torsions of residue <seqpos> are movable.

example: movemap.set_bb(49,True) See also: MoveMap MoveMap.set_chi Pose MinMover ShearMover SmallMover

References core::id::BB.

void core::kinematics::MoveMap::set_bb ( utility::vector1< bool allow_bb) [inline]

Sets BB torsions movable based on input array.

References core::id::BB.

void core::kinematics::MoveMap::set_bb_true_range ( Size const  begin,
Size const  end 
) [inline]

Sets the BB torsions between residues <begin> and <end> as movable, all other residues are non-movable.

example: movemap.set_bb_true_range(40,60) See also: MoveMap MoveMap.set_bb MoveMap.set_chi Pose MinMover ShearMover SmallMover

References core::sequence::end, and set_bb().

Referenced by protocols::surface_docking::SurfaceDockingProtocol::abinitio().

void core::kinematics::MoveMap::set_chi ( Size const  seqpos,
bool const  setting 
) [inline]

Sets whether or not the CHI torsions of residue <seqpos> are movable.

example: movemap.set_chi(49,True) See also: MoveMap MoveMap.set_bb Pose MinMover ShearMover SmallMover inline

References core::id::CHI.

void core::kinematics::MoveMap::set_chi ( bool const  setting) [inline]
void core::kinematics::MoveMap::set_chi ( utility::vector1< bool allow_chi) [inline]

set CHI torsions movable based on input array

References core::id::CHI.

void core::kinematics::MoveMap::set_chi_true_range ( Size const  begin,
Size const  end 
) [inline]

Sets the chi torsions between residues <begin> and <end> as movable and all other residues are non-movable.

Example: movemap.set_chi_true_range(40, 60) See also: MoveMap MoveMap.set_bb MoveMap.set_bb_true_range MoveMap.set_chi Pose MinMover ShearMover SmallMover

References core::sequence::end, and set_chi().

void core::kinematics::MoveMap::set_jump ( Size const  pos1,
Size const  pos2,
bool const  setting 
) [inline]

set JUMP moveable or not for one specific residue pair this mechanism does not mix with the "jump_nr" mechanism... i.e., if you set jump_nr 3 = movable ---> movemap does not know that this refers to say residue 23-89

References set_jump().

void core::kinematics::MoveMap::set_jump ( int const  jump_number,
bool const  setting 
) [inline]

Sets the movability of JUMP <jump_number> to <setting>

example: movemap.set_jump(1,True)

References core::id::JUMP.

void core::kinematics::MoveMap::set_jump ( bool const  setting) [inline]
void core::kinematics::MoveMap::set_jump ( id::JumpID const &  jump,
bool const  setting 
)

set/get for JumpIDs --- fold-tree independent definition of jumps

void core::kinematics::MoveMap::set_ranges_unmodifiable ( const std::vector< std::pair< Size, Size > > &  ranges)

Prevents backbone torsion modifications to the intervals specified by <ranges>. Each element of the vector is a pair, which specifies the begin and end indices. Counting begins with 1.

References make_table_of_pilot_apps::begin, core::sequence::end, and core::scoring::pair.

void core::kinematics::MoveMap::show ( std::ostream &  out,
Size  i 
) const

gives the BB and CHI bool values up to a given residue number

References protocols::comparative_modeling::features::A.

void core::kinematics::MoveMap::show ( Size  i) const [inline]

gives the BB and CHI bool values up to a given residue number wrapper for PyRosetta

References show().

Referenced by show().

TorsionID_Map::const_iterator core::kinematics::MoveMap::torsion_id_begin ( ) const [inline]

return an iterator pointing at the first element of the TorsionID_Map

Referenced by protocols::forge::build::SegmentInsert::insert_pose_torsion_override_movemap().

TorsionID_Map::const_iterator core::kinematics::MoveMap::torsion_id_end ( ) const [inline]

return an iterator pointing just past the last element of the TorsionID_Map

Referenced by protocols::forge::build::SegmentInsert::insert_pose_torsion_override_movemap().

TorsionTypeMap::const_iterator core::kinematics::MoveMap::torsion_type_begin ( ) const [inline]

return an iterator pointing just past the last element of the TorsionTypeMap

Referenced by protocols::forge::build::SegmentInsert::insert_pose_torsion_override_movemap().

TorsionTypeMap::const_iterator core::kinematics::MoveMap::torsion_type_end ( ) const [inline]

return an iterator pointing at the first element of the TorsionTypeMap

Referenced by protocols::forge::build::SegmentInsert::insert_pose_torsion_override_movemap().


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