holds particular score components, weights and calculates the total score for a fragment candidate More...

#include <PValuedFragmentScoreManager.hh>

Inheritance diagram for protocols::frag_picker::scores::PValuedFragmentScoreManager:

Collaboration diagram for protocols::frag_picker::scores::PValuedFragmentScoreManager:

Public Member Functions
	PValuedFragmentScoreManager ()
	creates an empty manager
bool	score_fragment_from_cache (FragmentCandidateOP, FragmentScoreMapOP)
	calculates all the small scores for a given fragment
bool	score_fragment (FragmentCandidateOP, FragmentScoreMapOP)
	calculates all the small scores for a given fragment
void	describe_fragments (utility::vector1< std::pair< FragmentCandidateOP, scores::FragmentScoreMapOP > > const &, std::ostream &)
	prints a flat table with all scores for all the fragments in a given vector

Detailed Description

holds particular score components, weights and calculates the total score for a fragment candidate

Detailed: a fragment picker object needs exactly one fragment manager to pick fragments. Adding new scoring methods: is supposed to be done FragmentPicker, which calls proper method from this class.

Constructor & Destructor Documentation

protocols::frag_picker::scores::PValuedFragmentScoreManager::PValuedFragmentScoreManager ( ) [inline]

creates an empty manager

void protocols::frag_picker::scores::PValuedFragmentScoreManager::describe_fragments	(	utility::vector1< std::pair< FragmentCandidateOP, scores::FragmentScoreMapOP > > const &	pairs,
		std::ostream &	out
	)		`[virtual]`

prints a flat table with all scores for all the fragments in a given vector

print the scores and associated p-values

Detailed: If the manager allows for annotations, they will be printed as well

bool protocols::frag_picker::scores::PValuedFragmentScoreManager::score_fragment	(	FragmentCandidateOP	candidate,
		FragmentScoreMapOP	empty_map
	)		`[virtual]`

calculates all the small scores for a given fragment

results are properly stored inside a FragmentScoreMap object

bool protocols::frag_picker::scores::PValuedFragmentScoreManager::score_fragment_from_cache	(	FragmentCandidateOP	candidate,
		FragmentScoreMapOP	empty_map
	)		`[virtual]`

calculates all the small scores for a given fragment

results are properly stored inside a FragmentScoreMap object

The documentation for this class was generated from the following files: