protocols::scoring::ImplicitFastClashCheck Class Reference

#include <ImplicitFastClashCheck.hh>

Inheritance diagram for protocols::scoring::ImplicitFastClashCheck:

Collaboration diagram for protocols::scoring::ImplicitFastClashCheck:

List of all members.

Public Member Functions
	ImplicitFastClashCheck (core::pose::Pose const &pose_in, core::Real clash_dis)
	ImplicitFastClashCheck (core::pose::Pose const &pose_in, core::Real clash_dis, utility::vector1< core::Size > ignore)
	ImplicitFastClashCheck (utility::vector1< core::pose::Pose > const &poses_in, core::Real clash_dis, utility::vector1< core::Size > ignore)
void	init_clash_check (utility::vector1< core::pose::Pose > const &poses, core::Real neighbor_cutoff, utility::vector1< core::Size > ignore)
bool	clash_check (numeric::xyzVector< core::Real > const &pp) const
platform::uint	clash_count (numeric::xyzVector< core::Real > const &pp) const
bool	clash_check (numeric::xyzVector< core::Real > const &pp, core::Size resno) const
bool	clash_check_trimer (core::pose::Pose const &pose, Size refrsd) const
void	dump_debug_pdb (utility::io::ozstream &out, core::kinematics::Stub const &stub, char chain= 'Z') const
void	dump_debug_pdb (std::string const &fname, core::kinematics::Stub const &stub, char chain= 'Z') const
bool	clash_check_test (numeric::xyzVector< core::Real > const &pp) const
core::Size	size ()

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Constructor & Destructor Documentation

protocols::scoring::ImplicitFastClashCheck::ImplicitFastClashCheck	(	core::pose::Pose const &	pose_in,
		core::Real	clash_dis
	)

protocols::scoring::ImplicitFastClashCheck::ImplicitFastClashCheck	(	core::pose::Pose const &	pose_in,
		core::Real	clash_dis,
		utility::vector1< core::Size >	ignore
	)

protocols::scoring::ImplicitFastClashCheck::ImplicitFastClashCheck	(	utility::vector1< core::pose::Pose > const &	poses_in,
		core::Real	clash_dis,
		utility::vector1< core::Size >	ignore
	)

---

Member Function Documentation

bool protocols::scoring::ImplicitFastClashCheck::clash_check

(

numeric::xyzVector< core::Real > const &

pp

)

const

Referenced by protocols::kinmatch::BruteFunGroupTK::place_c(), protocols::kinmatch::BruteFunGroupTK::place_d(), and protocols::kinmatch::BruteFunGroupTK::place_h().

bool protocols::scoring::ImplicitFastClashCheck::clash_check	(	numeric::xyzVector< core::Real > const &	pp,
		core::Size	resno
	)		const

bool protocols::scoring::ImplicitFastClashCheck::clash_check_test

(

numeric::xyzVector< core::Real > const &

pp

)

const

bool protocols::scoring::ImplicitFastClashCheck::clash_check_trimer	(	core::pose::Pose const &	pose,
		Size	refrsd
	)		const

References core::conformation::Residue::nheavyatoms(), core::pose::Pose::residue(), rot(), core::pose::Pose::xyz(), and protocols::kinmatch::xyz().

platform::uint protocols::scoring::ImplicitFastClashCheck::clash_count

(

numeric::xyzVector< core::Real > const &

pp

)

const

References make_table_of_pilot_apps::begin, and core::sequence::end.

void protocols::scoring::ImplicitFastClashCheck::dump_debug_pdb	(	std::string const &	fname,
		core::kinematics::Stub const &	stub,
		char	chain = 'Z'
	)		const

void protocols::scoring::ImplicitFastClashCheck::dump_debug_pdb	(	utility::io::ozstream &	out,
		core::kinematics::Stub const &	stub,
		char	chain = 'Z'
	)		const

References core::kinematics::Stub::global2local().

void protocols::scoring::ImplicitFastClashCheck::init_clash_check	(	utility::vector1< core::pose::Pose > const &	poses,
		core::Real	neighbor_cutoff,
		utility::vector1< core::Size >	ignore
	)

References core::scoring::electron_density::square().

core::Size protocols::scoring::ImplicitFastClashCheck::size

(

)

[inline]

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The documentation for this class was generated from the following files:

• src/protocols/scoring/ImplicitFastClashCheck.hh
• src/protocols/scoring/ImplicitFastClashCheck.cc