protocols::antibody::CloseOneMover Class Reference

Closes only one CDR onto a framework. More...

#include <GraftMover.hh>

Inheritance diagram for protocols::antibody::CloseOneMover:

Collaboration diagram for protocols::antibody::CloseOneMover:

List of all members.

Public Member Functions
	CloseOneMover (core::Size query_start, core::Size query_end)
void	set_default ()
virtual void	apply (core::pose::Pose &pose_in)
virtual std::string	get_name () const
	Each derived class must specify its name. The class name.
void	close_one_loop_stem (core::pose::Pose &pose_in, core::Size cutpoint_in, bool nter)
void	close_one_loop_stem (core::pose::Pose &pose_in, core::Size loop_begin, core::Size loop_end, core::Size cutpoint)
void	enable_benchmark_mode (bool setting)
	enable benchmark mode

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Detailed Description

Closes only one CDR onto a framework.

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Constructor & Destructor Documentation

protocols::antibody::CloseOneMover::CloseOneMover	(	core::Size	query_start,
		core::Size	query_end
	)

References set_default().

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Member Function Documentation

void protocols::antibody::CloseOneMover::apply

(

core::pose::Pose &

pose_in

)

[virtual]

Implements protocols::moves::Mover.

References protocols::simple_moves::ReturnSidechainMover::apply(), protocols::simple_moves::SwitchResidueTypeSetMover::apply(), protocols::forge::build::SegmentInsertConnectionScheme::C, core::chemical::CENTROID, close_one_loop_stem(), core::chemical::FA_STANDARD, protocols::forge::build::SegmentInsertConnectionScheme::N, core::pose::Pose::residue(), protocols::medal::to_centroid(), and core::conformation::Residue::xyz().

void protocols::antibody::CloseOneMover::close_one_loop_stem	(	core::pose::Pose &	pose_in,
		core::Size	cutpoint_in,
		bool	nter
	)

References core::pose::add_variant_type_to_pose_residue(), protocols::loops::loop_closure::ccd::ccd_moves(), core::scoring::chainbreak, core::scoring::ScoreFunctionFactory::create_score_function(), core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, core::pose::Pose::fold_tree(), core::conformation::Residue::has_variant_type(), core::conformation::Residue::is_upper_terminus(), core::pose::Pose::residue(), core::pose::Pose::set_secstruct(), protocols::antibody::simple_one_loop_fold_tree(), and core::pose::Pose::total_residue().

Referenced by apply().

void protocols::antibody::CloseOneMover::close_one_loop_stem	(	core::pose::Pose &	pose_in,
		core::Size	loop_begin,
		core::Size	loop_end,
		core::Size	cutpoint
	)

References core::pose::add_variant_type_to_pose_residue(), protocols::loops::loop_closure::ccd::ccd_moves(), core::scoring::chainbreak, core::scoring::ScoreFunctionFactory::create_score_function(), core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, core::pose::Pose::fold_tree(), core::conformation::Residue::has_variant_type(), core::conformation::Residue::is_upper_terminus(), core::pose::Pose::residue(), core::pose::Pose::set_secstruct(), protocols::antibody::simple_one_loop_fold_tree(), and core::pose::Pose::total_residue().

void protocols::antibody::CloseOneMover::enable_benchmark_mode

(

bool

setting

)

[inline]

enable benchmark mode

std::string protocols::antibody::CloseOneMover::get_name

(

)

const [virtual]

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

void protocols::antibody::CloseOneMover::set_default

(

)

Referenced by CloseOneMover().

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The documentation for this class was generated from the following files:

• src/protocols/antibody/GraftMover.hh
• src/protocols/antibody/GraftMover.cc