Rosetta 3.4
Public Member Functions | Protected Attributes
protocols::frag_picker::scores::ProfileScoreSubMatrix Class Reference

a fragment candidate More...

#include <ProfileScoreSubMatrix.hh>

Inheritance diagram for protocols::frag_picker::scores::ProfileScoreSubMatrix:
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List of all members.

Public Member Functions

 ProfileScoreSubMatrix (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string sequence, Size longest_vall_chunk, std::string subMatrixFile)
 ~ProfileScoreSubMatrix ()
void do_caching (VallChunkOP)
void clean_up ()
bool score (FragmentCandidateOP, FragmentScoreMapOP)
bool cached_score (FragmentCandidateOP, FragmentScoreMapOP)

Protected Attributes

Matrix scores_

Detailed Description

a fragment candidate


Constructor & Destructor Documentation

protocols::frag_picker::scores::ProfileScoreSubMatrix::ProfileScoreSubMatrix ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
std::string  sequence,
Size  longest_vall_chunk,
std::string  subMatrixFile 
)
protocols::frag_picker::scores::ProfileScoreSubMatrix::~ProfileScoreSubMatrix ( )

Member Function Documentation

bool protocols::frag_picker::scores::ProfileScoreSubMatrix::cached_score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]
void protocols::frag_picker::scores::ProfileScoreSubMatrix::clean_up ( ) [inline, virtual]
void protocols::frag_picker::scores::ProfileScoreSubMatrix::do_caching ( VallChunkOP  chunk) [virtual]
bool protocols::frag_picker::scores::ProfileScoreSubMatrix::score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]

Member Data Documentation


The documentation for this class was generated from the following files:
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