Rosetta 3.4
Public Member Functions | Protected Attributes
protocols::frag_picker::scores::FragmentScoringMethod Class Reference

a fragment candidate score More...

#include <FragmentScoringMethod.hh>

Inheritance diagram for protocols::frag_picker::scores::FragmentScoringMethod:
Inheritance graph
[legend]
Collaboration diagram for protocols::frag_picker::scores::FragmentScoringMethod:
Collaboration graph
[legend]

List of all members.

Public Member Functions

 FragmentScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
virtual bool score (FragmentCandidateOP, FragmentScoreMapOP)=0
std::string & get_score_name ()
 Returns a name of this scoring method.
Size get_id ()
 Returns an integer index assigned to this scoring method by a scoring manager.
void set_id (Size id)
 Sets a new integer index for this scoring method.
Size get_priority ()
 Returns a priority of this scoring method.
Real get_min_allowed_score ()
 Returns the lowest acceptable score value for this scoring method.
bool get_use_lowest ()
 Returns the boolean choice on using the above lowest acceptable score value.
void set_min_allowed_score (Real lowest_acceptable_value)
 Sets a new value of the lowest acceptable score.

Protected Attributes

Size id_
Size priority_
std::string name_
Real lowest_acceptable_value_
bool use_lowest_

Detailed Description

a fragment candidate score


Constructor & Destructor Documentation

protocols::frag_picker::scores::FragmentScoringMethod::FragmentScoringMethod ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
std::string  name 
) [inline]

Member Function Documentation

Size protocols::frag_picker::scores::FragmentScoringMethod::get_id ( ) [inline]

Returns an integer index assigned to this scoring method by a scoring manager.

Referenced by protocols::frag_picker::FragmentPicker::set_up_quota_nnmake_style(), and protocols::frag_picker::FragmentPicker::set_up_ss_abego_quota().

Real protocols::frag_picker::scores::FragmentScoringMethod::get_min_allowed_score ( ) [inline]

Returns the lowest acceptable score value for this scoring method.

Detailed: Fragments that are below the threshold will be discarded
Size protocols::frag_picker::scores::FragmentScoringMethod::get_priority ( ) [inline]

Returns a priority of this scoring method.

Detailed: The higher the priority, the earlier a given scoring method is evaluated
std::string& protocols::frag_picker::scores::FragmentScoringMethod::get_score_name ( ) [inline]

Returns a name of this scoring method.

bool protocols::frag_picker::scores::FragmentScoringMethod::get_use_lowest ( ) [inline]

Returns the boolean choice on using the above lowest acceptable score value.

Detailed: False means there is no lowest acceptable score
virtual bool protocols::frag_picker::scores::FragmentScoringMethod::score ( FragmentCandidateOP  ,
FragmentScoreMapOP   
) [pure virtual]

Implemented in protocols::frag_picker::scores::ABEGO_SS_Score, protocols::frag_picker::scores::AmbigCSScore, protocols::frag_picker::scores::BFactor, protocols::frag_picker::scores::CachingScoringMethod, protocols::frag_picker::scores::ConstScore, protocols::frag_picker::scores::CSScore, protocols::frag_picker::scores::DisulfideDistance, protocols::frag_picker::scores::DisulfideIdentity, protocols::frag_picker::scores::FragmentAllAtomCrmsd, protocols::frag_picker::scores::FragmentCrmsd, protocols::frag_picker::scores::FragmentCrmsdResDepth, protocols::frag_picker::scores::FragmentDME, protocols::frag_picker::scores::GunnCostScore, protocols::frag_picker::scores::HydrophobicityProfileSimilarity, protocols::frag_picker::scores::HydrophobicitySimilarity, protocols::frag_picker::scores::JCoupling, protocols::frag_picker::scores::MidPhiOut, protocols::frag_picker::scores::MidPsiOut, protocols::frag_picker::scores::PartialSecondarySimilarity, protocols::frag_picker::scores::PCS_FragDistance, protocols::frag_picker::scores::Phi, protocols::frag_picker::scores::PhiPsiRmsd, protocols::frag_picker::scores::PhiPsiSquareWell, protocols::frag_picker::scores::ProfileScoreBlosum62, protocols::frag_picker::scores::ProfileScoreL1, protocols::frag_picker::scores::ProfileScoreStructL1, protocols::frag_picker::scores::ProfileScoreSubMatrix, protocols::frag_picker::scores::ProlinePhiScore, protocols::frag_picker::scores::Psi, protocols::frag_picker::scores::RamaScore, protocols::frag_picker::scores::RDCScore, protocols::frag_picker::scores::RDCScore, protocols::frag_picker::scores::ScoreEValuator, protocols::frag_picker::scores::SecondaryIdentity, protocols::frag_picker::scores::SecondarySimilarity, protocols::frag_picker::scores::SequenceIdentity, protocols::frag_picker::scores::SolventAccessibility, and protocols::frag_picker::scores::TalosSSSimilarity.

void protocols::frag_picker::scores::FragmentScoringMethod::set_id ( Size  id) [inline]

Sets a new integer index for this scoring method.

Detailed: the method should be called only by a scoring manager
void protocols::frag_picker::scores::FragmentScoringMethod::set_min_allowed_score ( Real  lowest_acceptable_value) [inline]

Sets a new value of the lowest acceptable score.

Detailed: Fragments that are below the threshold will be discarded

Member Data Documentation

Referenced by protocols::frag_picker::scores::TorsionBinSimilarity::cached_score(), protocols::frag_picker::scores::SecondarySimilarity::cached_score(), protocols::frag_picker::scores::RamaScore::cached_score(), protocols::frag_picker::scores::ProfileScoreSubMatrix::cached_score(), protocols::frag_picker::scores::ProfileScoreStructL1::cached_score(), protocols::frag_picker::scores::ProfileScoreL1::cached_score(), protocols::frag_picker::scores::ProfileScoreBlosum62::cached_score(), protocols::frag_picker::scores::PhiPsiRmsd::cached_score(), protocols::frag_picker::scores::PCS_FragDistance::cached_score(), protocols::frag_picker::scores::MidPsiOut::cached_score(), protocols::frag_picker::scores::MidPhiOut::cached_score(), protocols::frag_picker::scores::LAMBEGO_Similarity::cached_score(), protocols::frag_picker::scores::InterbondAngleScore::cached_score(), protocols::frag_picker::scores::GunnCostScore::cached_score(), protocols::frag_picker::scores::FragmentDME::cached_score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::cached_score(), protocols::frag_picker::scores::FragmentCrmsd::cached_score(), protocols::frag_picker::scores::DisulfideDistance::cached_score(), protocols::frag_picker::scores::DihedralConstraintsScore::cached_score(), protocols::frag_picker::scores::CSScore::cached_score(), protocols::frag_picker::scores::AtomPairConstraintsScore::cached_score(), protocols::frag_picker::scores::AmbigCSScore::cached_score(), protocols::frag_picker::scores::ABEGO_SS_Score::cached_score(), protocols::frag_picker::scores::SequenceIdentity::describe_score(), protocols::frag_picker::scores::SecondaryIdentity::describe_score(), protocols::frag_picker::scores::ProlinePhiScore::describe_score(), protocols::frag_picker::scores::PhiPsiRmsd::describe_score(), protocols::frag_picker::scores::DisulfideIdentity::describe_score(), protocols::frag_picker::scores::BFactor::describe_score(), protocols::frag_picker::scores::SolventAccessibility::score(), protocols::frag_picker::scores::SequenceIdentity::score(), protocols::frag_picker::scores::SecondarySimilarity::score(), protocols::frag_picker::scores::SecondaryIdentity::score(), protocols::frag_picker::scores::RDCScore::score(), protocols::frag_picker::scores::Psi::score(), protocols::frag_picker::scores::ProlinePhiScore::score(), protocols::frag_picker::scores::ProfileScoreStructL1::score(), protocols::frag_picker::scores::ProfileScoreL1::score(), protocols::frag_picker::scores::PhiPsiSquareWell::score(), protocols::frag_picker::scores::Phi::score(), protocols::frag_picker::scores::PartialSecondarySimilarity::score(), protocols::frag_picker::scores::JCoupling::score(), protocols::frag_picker::scores::HydrophobicitySimilarity::score(), protocols::frag_picker::scores::HydrophobicityProfileSimilarity::score(), protocols::frag_picker::scores::GunnCostScore::score(), protocols::frag_picker::scores::FragmentDME::score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::score(), protocols::frag_picker::scores::FragmentCrmsd::score(), protocols::frag_picker::scores::FragmentAllAtomCrmsd::score(), protocols::frag_picker::scores::DisulfideIdentity::score(), protocols::frag_picker::scores::ConstScore::score(), protocols::frag_picker::scores::BFactor::score(), and protocols::frag_picker::scores::ABEGO_SS_Score::score().

Referenced by protocols::frag_picker::scores::TorsionBinSimilarity::cached_score(), protocols::frag_picker::scores::SecondarySimilarity::cached_score(), protocols::frag_picker::scores::RamaScore::cached_score(), protocols::frag_picker::scores::ProfileScoreSubMatrix::cached_score(), protocols::frag_picker::scores::ProfileScoreStructL1::cached_score(), protocols::frag_picker::scores::ProfileScoreL1::cached_score(), protocols::frag_picker::scores::ProfileScoreBlosum62::cached_score(), protocols::frag_picker::scores::PhiPsiRmsd::cached_score(), protocols::frag_picker::scores::PCS_FragDistance::cached_score(), protocols::frag_picker::scores::LAMBEGO_Similarity::cached_score(), protocols::frag_picker::scores::InterbondAngleScore::cached_score(), protocols::frag_picker::scores::GunnCostScore::cached_score(), protocols::frag_picker::scores::FragmentDME::cached_score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::cached_score(), protocols::frag_picker::scores::FragmentCrmsd::cached_score(), protocols::frag_picker::scores::DisulfideDistance::cached_score(), protocols::frag_picker::scores::DihedralConstraintsScore::cached_score(), protocols::frag_picker::scores::CSScore::cached_score(), protocols::frag_picker::scores::AtomPairConstraintsScore::cached_score(), protocols::frag_picker::scores::AmbigCSScore::cached_score(), protocols::frag_picker::scores::ABEGO_SS_Score::cached_score(), protocols::frag_picker::scores::SequenceIdentity::describe_score(), protocols::frag_picker::scores::SecondaryIdentity::describe_score(), protocols::frag_picker::scores::ProlinePhiScore::describe_score(), protocols::frag_picker::scores::PhiPsiRmsd::describe_score(), protocols::frag_picker::scores::DisulfideIdentity::describe_score(), protocols::frag_picker::scores::BFactor::describe_score(), protocols::frag_picker::scores::SolventAccessibility::score(), protocols::frag_picker::scores::SequenceIdentity::score(), protocols::frag_picker::scores::SecondarySimilarity::score(), protocols::frag_picker::scores::SecondaryIdentity::score(), protocols::frag_picker::scores::RDCScore::score(), protocols::frag_picker::scores::Psi::score(), protocols::frag_picker::scores::ProlinePhiScore::score(), protocols::frag_picker::scores::ProfileScoreStructL1::score(), protocols::frag_picker::scores::ProfileScoreL1::score(), protocols::frag_picker::scores::PhiPsiSquareWell::score(), protocols::frag_picker::scores::Phi::score(), protocols::frag_picker::scores::PartialSecondarySimilarity::score(), protocols::frag_picker::scores::JCoupling::score(), protocols::frag_picker::scores::HydrophobicitySimilarity::score(), protocols::frag_picker::scores::HydrophobicityProfileSimilarity::score(), protocols::frag_picker::scores::GunnCostScore::score(), protocols::frag_picker::scores::FragmentDME::score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::score(), protocols::frag_picker::scores::FragmentCrmsd::score(), protocols::frag_picker::scores::FragmentAllAtomCrmsd::score(), protocols::frag_picker::scores::DisulfideIdentity::score(), protocols::frag_picker::scores::BFactor::score(), and protocols::frag_picker::scores::ABEGO_SS_Score::score().

Referenced by protocols::frag_picker::scores::TorsionBinSimilarity::cached_score(), protocols::frag_picker::scores::SecondarySimilarity::cached_score(), protocols::frag_picker::scores::RamaScore::cached_score(), protocols::frag_picker::scores::ProfileScoreSubMatrix::cached_score(), protocols::frag_picker::scores::ProfileScoreStructL1::cached_score(), protocols::frag_picker::scores::ProfileScoreL1::cached_score(), protocols::frag_picker::scores::ProfileScoreBlosum62::cached_score(), protocols::frag_picker::scores::PhiPsiRmsd::cached_score(), protocols::frag_picker::scores::PCS_FragDistance::cached_score(), protocols::frag_picker::scores::LAMBEGO_Similarity::cached_score(), protocols::frag_picker::scores::InterbondAngleScore::cached_score(), protocols::frag_picker::scores::GunnCostScore::cached_score(), protocols::frag_picker::scores::FragmentDME::cached_score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::cached_score(), protocols::frag_picker::scores::FragmentCrmsd::cached_score(), protocols::frag_picker::scores::DisulfideDistance::cached_score(), protocols::frag_picker::scores::DihedralConstraintsScore::cached_score(), protocols::frag_picker::scores::CSScore::cached_score(), protocols::frag_picker::scores::AtomPairConstraintsScore::cached_score(), protocols::frag_picker::scores::AmbigCSScore::cached_score(), protocols::frag_picker::scores::ABEGO_SS_Score::cached_score(), protocols::frag_picker::scores::SequenceIdentity::describe_score(), protocols::frag_picker::scores::SecondaryIdentity::describe_score(), protocols::frag_picker::scores::ProlinePhiScore::describe_score(), protocols::frag_picker::scores::PhiPsiRmsd::describe_score(), protocols::frag_picker::scores::DisulfideIdentity::describe_score(), protocols::frag_picker::scores::BFactor::describe_score(), protocols::frag_picker::scores::SolventAccessibility::score(), protocols::frag_picker::scores::SequenceIdentity::score(), protocols::frag_picker::scores::SecondarySimilarity::score(), protocols::frag_picker::scores::SecondaryIdentity::score(), protocols::frag_picker::scores::RDCScore::score(), protocols::frag_picker::scores::Psi::score(), protocols::frag_picker::scores::ProlinePhiScore::score(), protocols::frag_picker::scores::ProfileScoreStructL1::score(), protocols::frag_picker::scores::ProfileScoreL1::score(), protocols::frag_picker::scores::PhiPsiSquareWell::score(), protocols::frag_picker::scores::Phi::score(), protocols::frag_picker::scores::PartialSecondarySimilarity::score(), protocols::frag_picker::scores::JCoupling::score(), protocols::frag_picker::scores::HydrophobicitySimilarity::score(), protocols::frag_picker::scores::HydrophobicityProfileSimilarity::score(), protocols::frag_picker::scores::GunnCostScore::score(), protocols::frag_picker::scores::FragmentDME::score(), protocols::frag_picker::scores::FragmentCrmsdResDepth::score(), protocols::frag_picker::scores::FragmentCrmsd::score(), protocols::frag_picker::scores::FragmentAllAtomCrmsd::score(), protocols::frag_picker::scores::DisulfideIdentity::score(), protocols::frag_picker::scores::BFactor::score(), and protocols::frag_picker::scores::ABEGO_SS_Score::score().


The documentation for this class was generated from the following file:
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines