protocols::frag_picker::scores::JCoupling Class Reference

scores a fragment by the JCouplings More...

#include <JCoupling.hh>

Inheritance diagram for protocols::frag_picker::scores::JCoupling:

Collaboration diagram for protocols::frag_picker::scores::JCoupling:

List of all members.

Public Member Functions
	JCoupling (Size, Real, bool, JCouplingIO &)
	creates a
void	do_caching (VallChunkOP)
void	clean_up ()
bool	cached_score (FragmentCandidateOP, FragmentScoreMapOP)
bool	score (FragmentCandidateOP, FragmentScoreMapOP)

---

Detailed Description

scores a fragment by the JCouplings

---

Constructor & Destructor Documentation

protocols::frag_picker::scores::JCoupling::JCoupling	(	Size	priority,
		Real	lowest_acceptable_value,
		bool	use_lowest,
		JCouplingIO &	reader
	)

creates a

Detailed:

References protocols::frag_picker::JCouplingIO::get_length(), and protocols::frag_picker::JCouplingIO::get_parameters().

---

Member Function Documentation

bool protocols::frag_picker::scores::JCoupling::cached_score	(	FragmentCandidateOP	fragment,
		FragmentScoreMapOP	scores
	)		[virtual]

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References score().

void protocols::frag_picker::scores::JCoupling::clean_up

(

)

[virtual]

Implements protocols::frag_picker::scores::CachingScoringMethod.

void protocols::frag_picker::scores::JCoupling::do_caching

(

VallChunkOP

current_chunk

)

[virtual]

Implements protocols::frag_picker::scores::CachingScoringMethod.

bool protocols::frag_picker::scores::JCoupling::score	(	FragmentCandidateOP	fragment,
		FragmentScoreMapOP	scores
	)		[virtual]

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References protocols::frag_picker::JCouplingIO::get_data(), protocols::frag_picker::scores::FragmentScoringMethod::id_, protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_, and protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_.

Referenced by cached_score().

---

The documentation for this class was generated from the following files:

• src/protocols/frag_picker/scores/JCoupling.hh
• src/protocols/frag_picker/scores/JCoupling.cc