Rosetta 3.4
Public Types | Public Member Functions | Protected Member Functions
protocols::enzdes::EnzdesJobOutputter Class Reference

for now this class only writes a different scorefile than the default one written by the FileJobOutputter. the structure output format is pdb More...

#include <EnzdesJobOutputter.hh>

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List of all members.

Public Types

typedef
protocols::jd2::PDBJobOutputter 
parent

Public Member Functions

 EnzdesJobOutputter ()
 ~EnzdesJobOutputter ()
void final_pose (protocols::jd2::JobCOP job, core::pose::Pose const &pose)
 this function takes a string and writes it to disk (separately from Tracer output). This implementation writes a single file whose filename is based on the job and a user-specified extension (default .data)
bool job_has_completed (protocols::jd2::JobCOP job)
 this function is not used for output, but it belongs here since it needs to check the same output locations as the class normally writes to. This class checks wherever output goes to see if the job's expected output already exists (on disk or whatever). This is the most basic form of checkpointing. The base implementation looks for a pdb with the job's name already in existence.

Protected Member Functions

void scorefile (protocols::jd2::JobCOP job, core::pose::Pose const &pose, std::string tag="", std::string scorefile="")
 this function will handle the scorefile. If you need to make it virtual do so. Latter two arguments are for redirecting the output to a different scorefile for "other_pose"s. Also adds StringReal job info to the score file.

Detailed Description

for now this class only writes a different scorefile than the default one written by the FileJobOutputter. the structure output format is pdb


Member Typedef Documentation

Reimplemented from protocols::jd2::PDBJobOutputter.


Constructor & Destructor Documentation

protocols::enzdes::EnzdesJobOutputter::EnzdesJobOutputter ( )
protocols::enzdes::EnzdesJobOutputter::~EnzdesJobOutputter ( )

Member Function Documentation

void protocols::enzdes::EnzdesJobOutputter::final_pose ( protocols::jd2::JobCOP  job,
core::pose::Pose const &  pose 
) [virtual]

this function takes a string and writes it to disk (separately from Tracer output). This implementation writes a single file whose filename is based on the job and a user-specified extension (default .data)

this function outputs the final result of a job. This implementation will write a PDB file (plus scores).

Reimplemented from protocols::jd2::PDBJobOutputter.

References protocols::jd2::PDBJobOutputter::final_pose(), and scorefile().

bool protocols::enzdes::EnzdesJobOutputter::job_has_completed ( protocols::jd2::JobCOP  job) [virtual]

this function is not used for output, but it belongs here since it needs to check the same output locations as the class normally writes to. This class checks wherever output goes to see if the job's expected output already exists (on disk or whatever). This is the most basic form of checkpointing. The base implementation looks for a pdb with the job's name already in existence.

Reimplemented from protocols::jd2::PDBJobOutputter.

References protocols::jd2::PDBJobOutputter::job_has_completed().

void protocols::enzdes::EnzdesJobOutputter::scorefile ( protocols::jd2::JobCOP  job,
core::pose::Pose const &  pose,
std::string  tag = "",
std::string  scorefile = "" 
) [protected, virtual]

this function will handle the scorefile. If you need to make it virtual do so. Latter two arguments are for redirecting the output to a different scorefile for "other_pose"s. Also adds StringReal job info to the score file.

Reimplemented from protocols::jd2::FileJobOutputter.

References protocols::jd2::PDBJobOutputter::dump_pose(), protocols::toolbox::match_enzdes_util::get_enzdes_observer(), make_table_of_pilot_apps::name, protocols::jd2::PDBJobOutputter::output_name(), protocols::jd2::FileJobOutputter::scorefile_name(), and protocols::jd2::FileJobOutputter::write_scorefile().

Referenced by final_pose().


The documentation for this class was generated from the following files:
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