Rosetta 3.4
core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > Member List
This is the complete list of members for core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >, including all inherited members.
add_background_edge(int first_class_node_index, int bg_node_index)core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [protected]
AdditionalBackgroundNodesInteractionGraph(int num_nodes)core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
BackgroundEdgeList typedefcore::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
BackgroundEdgeListConstIter typedefcore::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
BackgroundEdgeListIter typedefcore::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
BackgroundNodeVector typedefcore::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
BackgroundToFirstClassEdge< V, E, G > classcore::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [friend]
bg_node_2_resid(Size node_index)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
blanket_assign_state_0()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
calculate_alt_state_hpatch_score()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
calculate_hpatch_deltaE()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
commit_considered_substitution()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
consider_substitution(int node_ind, int new_state, core::PackerEnergy &delta_energy, core::PackerEnergy &prev_energy_for_node)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
count_dynamic_memory() const core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
count_static_memory() const core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
create_background_edge(int fc_node_index, int bg_node_index)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [protected, virtual]
create_background_node(int node_index)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [protected, virtual]
create_new_edge(int index1, int index2)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [protected, virtual]
create_new_node(int node_index, int num_states)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [protected, virtual]
drop_background_edge(BackgroundEdgeListIter iter)core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [protected]
find_background_edge(int first_class_node_index, int bg_node_index) const core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [protected]
get_all_sasas(utility::vector1< Real > &node_sasas, utility::vector1< Real > &bgnode_sasas)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
get_background_node(int index) const core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [inline, protected]
get_bg_edge_list_begin() const core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [inline, protected]
get_bg_edge_list_end() const core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [inline, protected]
get_edge_memory_usage() const core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
get_energy_current_state_assignment()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
get_energy_sum_for_vertex_group(Size group_id)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
get_hpatch_bg_node(int index) const core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [inline]
get_hpatch_node(int index) const core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [inline]
get_hpatch_score()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
get_network_state() const core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
get_num_background_nodes() const core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [inline]
get_num_bg_edges() const core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [inline, protected]
getTotalMemoryUsage() const core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [virtual]
HPatchInteractionGraph(int num_nodes)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
initialize(rotamer_set::RotamerSetsBase const &rot_sets)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
packer_task() const core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [inline]
parent typedefcore::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
pose() const core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [inline]
prepare_for_simulated_annealing()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
print() const core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
print_hpatch_avoidance_stats()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [static]
print_internal_energies_for_current_state_assignment()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
register_bg_node_affected_by_rotsub(int bg_node_ind)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
register_fc_node_affected_by_rotsub(int fc_node_ind)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
register_fc_node_in_state0()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
reset_hpatch_avoidance_stats()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [static]
rotamer_sets() const core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [inline]
set_background_residue_rotamer_dots(Size residue, conformation::Residue const &rotamer)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
set_errorfull_deltaE_threshold(core::PackerEnergy deltaE)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
set_network_state(FArray1_int &node_states)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
set_num_background_nodes(int num_bg_nodes)core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [protected]
set_num_background_residues(Size num_background_residues)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
set_num_residues_in_protein(Size num_res)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
set_observed_sufficient_boolean_true()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
set_packer_task(task::PackerTask const &task)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
set_pose(pose::Pose const &pose)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
set_residue_as_background_residue(int residue)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
set_rotamer_dots_for_node_state(Size node_index, Size state, conformation::Residue const &rotamer)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
set_rotamer_sets(rotamer_set::RotamerSets const &rotsets)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
set_score_weight(Real weight)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [inline]
track_hpatch_E_min()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [protected]
update_disjoint_sets_using_cache(conformation::Residue const &rsd, InvRotamerDots const &invdots, utility::vector1< Size > const &exp_hphobes, Size residue_djs_offset, utility::vector1< utility::vector1< bool > > const &atom_atom_self_overlap, graph::DisjointSets &ds)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
update_disjoint_sets_using_cache(conformation::Residue const &rsd1, InvRotamerDots const &invdots1, utility::vector1< Size > const &exp_hphobes1, Size djs_offset_1, conformation::Residue const &rsd2, InvRotamerDots const &invdots2, utility::vector1< Size > const &exp_hphobes2, Size djs_offset_2, utility::vector1< utility::vector1< bool > > const &atom_atom_overlaps, graph::DisjointSets &ds)core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
update_internal_energy_totals_hpatch()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [protected]
~AdditionalBackgroundNodesInteractionGraph()core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G > [virtual]
~HPatchInteractionGraph()core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > [virtual]
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