Rosetta 3.4
Public Member Functions
protocols::frag_picker::scores::FragmentAllAtomCrmsd Class Reference

scores a fragment by its crmsd to the given reference structure More...

#include <FragmentAllAtomCrmsd.hh>

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List of all members.

Public Member Functions

 FragmentAllAtomCrmsd (Size, Real, bool, std::string, core::pose::PoseOP)
 creates a crmsd-based scoring function.
 FragmentAllAtomCrmsd (Size, Real, bool, std::string, utility::vector1< utility::vector1< Real > >)
 creates a crmsd-based scoring function.
 ~FragmentAllAtomCrmsd ()
bool score (FragmentCandidateOP, FragmentScoreMapOP)

Detailed Description

scores a fragment by its crmsd to the given reference structure


Constructor & Destructor Documentation

protocols::frag_picker::scores::FragmentAllAtomCrmsd::FragmentAllAtomCrmsd ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
std::string  query_sequence,
core::pose::PoseOP  reference_pose 
)

creates a crmsd-based scoring function.

Detailed: fragments will be compared to a given pose, which should have the same number of residues a the query sequence

References core::pose::make_pose_from_sequence().

protocols::frag_picker::scores::FragmentAllAtomCrmsd::FragmentAllAtomCrmsd ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
std::string  query_sequence,
utility::vector1< utility::vector1< Real > >  xyz 
)

creates a crmsd-based scoring function.

Detailed: fragments will be compared to given coordinates, which should have the same number of residues a the query sequence

References make_table_of_pilot_apps::d, core::pose::make_pose_from_sequence(), protocols::frag_picker::scores::trRmsScore(), and protocols::kinmatch::xyz().

protocols::frag_picker::scores::FragmentAllAtomCrmsd::~FragmentAllAtomCrmsd ( )

Member Function Documentation

bool protocols::frag_picker::scores::FragmentAllAtomCrmsd::score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]

The documentation for this class was generated from the following files:
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