Rosetta 3.4
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src/core/pose/util.tmpl.hh File Reference
#include <core/pose/util.hh>
#include <map>
#include <set>
#include <numeric/xyzVector.hh>
#include <utility/vector1.fwd.hh>
#include <core/types.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ResidueType.fwd.hh>
#include <core/chemical/VariantType.fwd.hh>
#include <core/id/AtomID.fwd.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/DOF_ID_Mask.fwd.hh>
#include <core/id/NamedAtomID.fwd.hh>
#include <core/id/NamedStubID.fwd.hh>
#include <core/id/TorsionID.fwd.hh>
#include <core/kinematics/FoldTree.fwd.hh>
#include <core/kinematics/Jump.fwd.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <core/kinematics/RT.fwd.hh>
#include <core/kinematics/tree/Atom.fwd.hh>
#include <core/scoring/ScoreType.hh>
#include <core/pose/Pose.hh>
#include <core/pose/MiniPose.fwd.hh>
#include <utility/vector1.hh>
#include <platform/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/Adduct.fwd.hh>
#include <core/chemical/Adduct.hh>
#include <core/chemical/AtomICoor.fwd.hh>
#include <core/chemical/AtomICoor.hh>
#include <core/chemical/AtomType.fwd.hh>
#include <core/chemical/AtomTypeSet.fwd.hh>
#include <core/chemical/ElementSet.fwd.hh>
#include <core/chemical/MMAtomType.fwd.hh>
#include <core/chemical/MMAtomTypeSet.fwd.hh>
#include <core/chemical/ResConnID.fwd.hh>
#include <core/chemical/ResConnID.hh>
#include <core/chemical/ResidueConnection.fwd.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/orbitals/ICoorOrbitalData.hh>
#include <core/chemical/orbitals/OrbitalType.fwd.hh>
#include <core/chemical/orbitals/OrbitalTypeSet.fwd.hh>
#include <core/chemical/sdf/MolData.fwd.hh>
#include <core/chemical/sdf/MolData.hh>
#include <core/conformation/Atom.fwd.hh>
#include <core/conformation/Atom.hh>
#include <core/conformation/Conformation.fwd.hh>
#include <core/conformation/PseudoBond.fwd.hh>
#include <core/conformation/Residue.fwd.hh>
#include <core/conformation/orbitals/OrbitalXYZCoords.hh>
#include <core/conformation/signals/ConnectionEvent.fwd.hh>
#include <core/conformation/signals/ConnectionEvent.hh>
#include <core/conformation/signals/GeneralEvent.fwd.hh>
#include <core/conformation/signals/GeneralEvent.hh>
#include <core/conformation/signals/IdentityEvent.fwd.hh>
#include <core/conformation/signals/IdentityEvent.hh>
#include <core/conformation/signals/LengthEvent.fwd.hh>
#include <core/conformation/signals/LengthEvent.hh>
#include <core/conformation/signals/XYZEvent.fwd.hh>
#include <core/conformation/signals/XYZEvent.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.fwd.hh>
#include <core/id/AtomID_Mask.fwd.hh>
#include <core/id/DOF_ID.fwd.hh>
#include <core/id/DOF_ID.hh>
#include <core/id/DOF_ID_Map.fwd.hh>
#include <core/id/SequenceMapping.fwd.hh>
#include <core/id/types.hh>
#include <core/kinematics/AtomPointer.fwd.hh>
#include <core/kinematics/AtomTree.fwd.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/AtomWithDOFChange.fwd.hh>
#include <core/kinematics/DomainMap.fwd.hh>
#include <core/kinematics/Edge.fwd.hh>
#include <core/kinematics/Edge.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MinimizerMapBase.fwd.hh>
#include <core/kinematics/RT.hh>
#include <core/kinematics/ResidueCoordinateChangeList.fwd.hh>
#include <core/kinematics/Stub.fwd.hh>
#include <core/kinematics/Stub.hh>
#include <core/kinematics/tree/Atom.hh>
#include <core/pose/PDBInfo.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pose/datacache/ObserverCache.fwd.hh>
#include <core/pose/metrics/PoseMetricContainer.fwd.hh>
#include <core/pose/signals/ConformationEvent.fwd.hh>
#include <core/pose/signals/DestructionEvent.fwd.hh>
#include <core/pose/signals/EnergyEvent.fwd.hh>
#include <core/pose/signals/GeneralEvent.fwd.hh>
#include <core/scoring/Energies.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/constraints/Constraint.fwd.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <utility/down_cast.hh>
#include <utility/exit.hh>
#include <utility/vector0_bool.hh>
#include <utility/vector1_bool.hh>
#include <utility/vectorL.fwd.hh>
#include <utility/vectorL.hh>
#include <utility/vectorL_Selector.hh>
#include <utility/vectorL_bool.hh>
#include <utility/keys/Key2Tuple.fwd.hh>
#include <utility/keys/Key2Tuple.hh>
#include <utility/keys/Key3Tuple.fwd.hh>
#include <utility/keys/Key3Tuple.hh>
#include <utility/keys/Key4Tuple.fwd.hh>
#include <utility/keys/Key4Tuple.hh>
#include <utility/pointer/ReferenceCount.fwd.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <utility/pointer/access_ptr.fwd.hh>
#include <utility/pointer/access_ptr.hh>
#include <utility/pointer/owning_ptr.functions.hh>
#include <utility/pointer/owning_ptr.fwd.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/signals/BufferedSignalHub.fwd.hh>
#include <utility/signals/BufferedSignalHub.hh>
#include <utility/signals/Link.fwd.hh>
#include <utility/signals/Link.hh>
#include <utility/signals/LinkUnit.fwd.hh>
#include <utility/signals/LinkUnit.hh>
#include <utility/signals/PausableSignalHub.fwd.hh>
#include <utility/signals/PausableSignalHub.hh>
#include <utility/signals/SignalHub.fwd.hh>
#include <utility/signals/SignalHub.hh>
#include <numeric/numeric.functions.hh>
#include <numeric/sphericalVector.fwd.hh>
#include <numeric/trig.functions.hh>
#include <numeric/xyz.functions.fwd.hh>
#include <numeric/xyzMatrix.fwd.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyzVector.fwd.hh>
#include <numeric/internal/ColPointers.hh>
#include <numeric/internal/ColVectors.hh>
#include <numeric/internal/ColsPointer.hh>
#include <numeric/internal/RowPointers.hh>
#include <numeric/internal/RowVectors.hh>
#include <numeric/internal/RowsPointer.hh>
#include <ObjexxFCL/Dimension.fwd.hh>
#include <ObjexxFCL/Dimension.hh>
#include <ObjexxFCL/DimensionExpression.hh>
#include <ObjexxFCL/DynamicIndexRange.fwd.hh>
#include <ObjexxFCL/DynamicIndexRange.hh>
#include <ObjexxFCL/FArray.fwd.hh>
#include <ObjexxFCL/FArray.hh>
#include <ObjexxFCL/FArray1.fwd.hh>
#include <ObjexxFCL/FArray1.hh>
#include <ObjexxFCL/FArray1D.fwd.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2.fwd.hh>
#include <ObjexxFCL/FArray2.hh>
#include <ObjexxFCL/FArray2D.fwd.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/FArrayInitializer.fwd.hh>
#include <ObjexxFCL/FArrayInitializer.hh>
#include <ObjexxFCL/FArraySection.fwd.hh>
#include <ObjexxFCL/FArraySection.hh>
#include <ObjexxFCL/FArrayTraits.fwd.hh>
#include <ObjexxFCL/FArrayTraits.hh>
#include <ObjexxFCL/IndexRange.fwd.hh>
#include <ObjexxFCL/IndexRange.hh>
#include <ObjexxFCL/InitializerSentinel.hh>
#include <ObjexxFCL/Observer.fwd.hh>
#include <ObjexxFCL/Observer.hh>
#include <ObjexxFCL/ObserverMulti.hh>
#include <ObjexxFCL/ObserverSingle.hh>
#include <ObjexxFCL/ProxySentinel.hh>
#include <ObjexxFCL/SetWrapper.fwd.hh>
#include <ObjexxFCL/Star.fwd.hh>
#include <ObjexxFCL/Star.hh>
#include <ObjexxFCL/proxy_const_assert.hh>
#include <algorithm>
#include <cassert>
#include <cmath>
#include <cstddef>
#include <cstdio>
#include <cstdlib>
#include <iomanip>
#include <iosfwd>
#include <iostream>
#include <limits>
#include <ostream>
#include <string>
#include <vector>
#include <basic/MetricValue.fwd.hh>
#include <basic/datacache/BasicDataCache.fwd.hh>
#include <boost/bind.hpp>
#include <boost/function.hpp>
#include <boost/functional/hash.hpp>

Namespaces

namespace  core
 

A class for defining atom parameters, known as atom_types.


namespace  core::pose

Functions

template<typename T >
void core::pose::initialize_dof_id_map (id::DOF_ID_Map< T > &dof_map, Pose const &pose)
 Initialize a DOF_ID_Map for a given Pose using the DOF_ID_Map's current default fill values.
template<typename T >
void core::pose::initialize_dof_id_map (id::DOF_ID_Map< T > &dof_map, Pose const &pose, T const &value)
 Initialize a DOF_ID_Map for a given Pose using a specified fill value.
core::Real core::pose::pose_max_nbr_radius (Pose const &pose)
 returns a Distance
template<typename T >
void core::pose::initialize_atomid_map (id::AtomID_Map< T > &atom_map, pose::Pose const &pose)
 Initialize an AtomID_Map for a given Pose using the AtomID_Map's current default fill values.
template<typename T >
void core::pose::initialize_atomid_map (id::AtomID_Map< T > &atom_map, pose::Pose const &pose, T const &value)
 Initialize an AtomID_Map for a given Pose using a specified fill value.
template<typename T >
void core::pose::initialize_atomid_map (id::AtomID_Map< T > &atom_map, conformation::Conformation const &conformation)
 Initialize an AtomID_Map for a given Conformation using the AtomID_Map's current default fill values.
template<typename T >
void core::pose::initialize_atomid_map (id::AtomID_Map< T > &atom_map, conformation::Conformation const &conformation, T const &value)
 Initialize an AtomID_Map for a given Conformation using a specified fill value.
template<typename T >
void core::pose::initialize_atomid_map_heavy_only (id::AtomID_Map< T > &atom_map, pose::Pose const &pose)
 Initialize an AtomID_Map for a given Pose using the AtomID_Map's current default fill values.
template<typename T >
void core::pose::initialize_atomid_map_heavy_only (id::AtomID_Map< T > &atom_map, pose::Pose const &pose, T const &value)
 Initialize an AtomID_Map for a given Pose using a specified fill value.
template<typename T >
void core::pose::initialize_atomid_map_heavy_only (id::AtomID_Map< T > &atom_map, conformation::Conformation const &conformation)
 Initialize an AtomID_Map for a given Conformation using the AtomID_Map's current default fill values.
template<typename T >
void core::pose::initialize_atomid_map_heavy_only (id::AtomID_Map< T > &atom_map, conformation::Conformation const &conformation, T const &value)
 Initialize an AtomID_Map for a given Conformation using a specified fill value.
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