protocols::simple_moves::RotamerTrialsMover Class Reference

#include <RotamerTrialsMover.hh>

Inheritance diagram for protocols::simple_moves::RotamerTrialsMover:

Collaboration diagram for protocols::simple_moves::RotamerTrialsMover:

List of all members.

Public Types
typedef core::scoring::ScoreFunctionOP	ScoreFunctionOP
typedef core::scoring::ScoreFunctionCOP	ScoreFunctionCOP
typedef core::pack::task::PackerTask	PackerTask
typedef core::pack::task::PackerTaskOP	PackerTaskOP
typedef core::pack::task::PackerTaskCOP	PackerTaskCOP
typedef core::pack::task::TaskFactoryCOP	TaskFactoryCOP
typedef protocols::moves::MoverOP	MoverOP
Public Member Functions
	RotamerTrialsMover ()
	RotamerTrialsMover (ScoreFunctionCOP scorefxn_in, PackerTask &task_in)
	constructor with PackerTask. use a PackerTask ONLY for fixed-sequence work. WARNING TO ANY DESIGNER WHO PASSES IN A TASK: YOUR DESIGN STEPS WILL BE UNDONE AS THIS TASK CONCEIVES OF THE INPUT SEQUENCE THAT CORRESPONDS TO THE ORIGINAL SEQUENCE
	RotamerTrialsMover (ScoreFunctionCOP scorefxn_in, TaskFactoryCOP factory_in)
	constructor with TaskFactory
	RotamerTrialsMover (RotamerTrialsMover const &rval)
	copy constructor
virtual	~RotamerTrialsMover ()
	destructor
virtual protocols::moves::MoverOP	clone () const
	clone this object
virtual protocols::moves::MoverOP	fresh_instance () const
	create this type of object
virtual void	apply (core::pose::Pose &pose)
virtual std::string	get_name () const
	Each derived class must specify its name. The class name.
void	score_function (core::scoring::ScoreFunctionCOP sf)
void	task_factory (core::pack::task::TaskFactoryCOP tf)
void	parse_my_tag (TagPtr const tag, protocols::moves::DataMap &data, Filters_map const &, protocols::moves::Movers_map const &, Pose const &)
	parse xml
Protected Member Functions
ScoreFunctionCOP	scorefxn () const
	read access for derived classes
PackerTaskCOP	task (core::pose::Pose const &pose) const
	read access for derived classes, pose needed to run TaskFactory

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Member Typedef Documentation

typedef protocols::moves::MoverOP protocols::simple_moves::RotamerTrialsMover::MoverOP

typedef core::pack::task::PackerTask protocols::simple_moves::RotamerTrialsMover::PackerTask

typedef core::pack::task::PackerTaskCOP protocols::simple_moves::RotamerTrialsMover::PackerTaskCOP

typedef core::pack::task::PackerTaskOP protocols::simple_moves::RotamerTrialsMover::PackerTaskOP

typedef core::scoring::ScoreFunctionCOP protocols::simple_moves::RotamerTrialsMover::ScoreFunctionCOP

typedef core::scoring::ScoreFunctionOP protocols::simple_moves::RotamerTrialsMover::ScoreFunctionOP

typedef core::pack::task::TaskFactoryCOP protocols::simple_moves::RotamerTrialsMover::TaskFactoryCOP

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Constructor & Destructor Documentation

protocols::simple_moves::RotamerTrialsMover::RotamerTrialsMover

(

)

References protocols::moves::Mover::type().

Referenced by clone(), and fresh_instance().

protocols::simple_moves::RotamerTrialsMover::RotamerTrialsMover	(	ScoreFunctionCOP	scorefxn_in,
		PackerTask &	task_in
	)

constructor with PackerTask. use a PackerTask ONLY for fixed-sequence work. WARNING TO ANY DESIGNER WHO PASSES IN A TASK: YOUR DESIGN STEPS WILL BE UNDONE AS THIS TASK CONCEIVES OF THE INPUT SEQUENCE THAT CORRESPONDS TO THE ORIGINAL SEQUENCE

References core::pack::task::PackerTask::clone(), and protocols::moves::Mover::type().

protocols::simple_moves::RotamerTrialsMover::RotamerTrialsMover	(	ScoreFunctionCOP	scorefxn_in,
		TaskFactoryCOP	factory_in
	)

constructor with TaskFactory

References protocols::moves::Mover::type().

protocols::simple_moves::RotamerTrialsMover::RotamerTrialsMover

(

RotamerTrialsMover const &

rval

)

copy constructor

protocols::simple_moves::RotamerTrialsMover::~RotamerTrialsMover

(

)

[virtual]

destructor

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Member Function Documentation

void protocols::simple_moves::RotamerTrialsMover::apply

(

core::pose::Pose &

pose

)

[virtual]

Implements protocols::moves::Mover.

Reimplemented in protocols::simple_moves::EnergyCutRotamerTrialsMover, protocols::simple_moves::symmetry::SymRotamerTrialsMover, and protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover.

References core::pack::rotamer_trials(), task(), and protocols::simple_moves::TR().

RotamerTrialsMover::MoverOP protocols::simple_moves::RotamerTrialsMover::clone

(

)

const [virtual]

clone this object

Reimplemented from protocols::moves::Mover.

References RotamerTrialsMover().

Referenced by protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover::apply(), protocols::simple_moves::symmetry::SymRotamerTrialsMover::apply(), and protocols::simple_moves::EnergyCutRotamerTrialsMover::apply().

RotamerTrialsMover::MoverOP protocols::simple_moves::RotamerTrialsMover::fresh_instance

(

)

const [virtual]

create this type of object

Reimplemented from protocols::moves::Mover.

References RotamerTrialsMover().

std::string protocols::simple_moves::RotamerTrialsMover::get_name

(

)

const [virtual]

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

Reimplemented in protocols::simple_moves::EnergyCutRotamerTrialsMover, protocols::simple_moves::symmetry::SymRotamerTrialsMover, and protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover.

void protocols::simple_moves::RotamerTrialsMover::parse_my_tag	(	TagPtr const	tag,
		protocols::moves::DataMap &	data,
		Filters_map const &	,
		protocols::moves::Movers_map const &	,
		Pose const &
	)		[virtual]

parse xml

Reimplemented from protocols::moves::Mover.

Reimplemented in protocols::simple_moves::symmetry::SymRotamerTrialsMover.

References protocols::moves::DataMap::get(), protocols::rosetta_scripts::parse_task_operations(), scorefxn(), and task_factory().

void protocols::simple_moves::RotamerTrialsMover::score_function

(

core::scoring::ScoreFunctionCOP

sf

)

RotamerTrialsMover::ScoreFunctionCOP protocols::simple_moves::RotamerTrialsMover::scorefxn

(

)

const [protected]

read access for derived classes

Referenced by protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover::apply(), protocols::simple_moves::symmetry::SymRotamerTrialsMover::apply(), protocols::simple_moves::EnergyCutRotamerTrialsMover::apply(), and parse_my_tag().

RotamerTrialsMover::PackerTaskCOP protocols::simple_moves::RotamerTrialsMover::task

(

core::pose::Pose const &

pose

)

const [protected]

read access for derived classes, pose needed to run TaskFactory

read access for derived classes

Referenced by protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover::apply(), protocols::simple_moves::symmetry::SymRotamerTrialsMover::apply(), protocols::simple_moves::EnergyCutRotamerTrialsMover::apply(), and apply().

void protocols::simple_moves::RotamerTrialsMover::task_factory

(

core::pack::task::TaskFactoryCOP

tf

)

Referenced by parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/simple_moves/RotamerTrialsMover.hh
• src/protocols/simple_moves/RotamerTrialsMover.cc