Rosetta 3.4
Public Member Functions | Protected Attributes
protocols::frag_picker::scores::ProfileScoreStructL1 Class Reference

a fragment candidate More...

#include <ProfileScoreStructL1.hh>

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List of all members.

Public Member Functions

 ProfileScoreStructL1 (Size, Real, bool, sequence::SequenceProfileOP, utility::vector1< Size > &, Size)
 ~ProfileScoreStructL1 ()
void do_caching_simple (VallChunkOP)
void do_caching (VallChunkOP)
void clean_up ()
bool score (FragmentCandidateOP, FragmentScoreMapOP)
bool cached_score (FragmentCandidateOP, FragmentScoreMapOP)

Protected Attributes

Matrix scores_
utility::vector1< Matrixcache_

Detailed Description

a fragment candidate


Constructor & Destructor Documentation

protocols::frag_picker::scores::ProfileScoreStructL1::ProfileScoreStructL1 ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
sequence::SequenceProfileOP  query_profile,
utility::vector1< Size > &  frag_sizes,
Size  longest_vall_chunk 
)
protocols::frag_picker::scores::ProfileScoreStructL1::~ProfileScoreStructL1 ( )

Member Function Documentation

bool protocols::frag_picker::scores::ProfileScoreStructL1::cached_score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]
void protocols::frag_picker::scores::ProfileScoreStructL1::clean_up ( ) [inline, virtual]
void protocols::frag_picker::scores::ProfileScoreStructL1::do_caching ( VallChunkOP  chunk) [virtual]
void protocols::frag_picker::scores::ProfileScoreStructL1::do_caching_simple ( VallChunkOP  chunk)
bool protocols::frag_picker::scores::ProfileScoreStructL1::score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]

Member Data Documentation


The documentation for this class was generated from the following files:
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