protocols::dna::SeparateDnaFromNonDna Class Reference

#include <SeparateDnaFromNonDna.hh>

Inheritance diagram for protocols::dna::SeparateDnaFromNonDna:

Collaboration diagram for protocols::dna::SeparateDnaFromNonDna:

List of all members.

Public Member Functions
	SeparateDnaFromNonDna ()
	SeparateDnaFromNonDna (core::Real x, core::Real y, core::Real z)
	SeparateDnaFromNonDna (numeric::xyzVector< core::Real > const &xyz)
	SeparateDnaFromNonDna (SeparateDnaFromNonDna const &other)
virtual	~SeparateDnaFromNonDna ()
virtual void	apply (core::pose::Pose &pose)
	set up an appropriate fold tree for a non-DNA/DNA interface, and simply pull apart non-DNA and DNA
virtual std::string	get_name () const
	Each derived class must specify its name. The class name.
numeric::xyzVector< core::Real >	translation () const
virtual void	parse_my_tag (TagPtr const, moves::DataMap &, protocols::filters::Filters_map const &, moves::Movers_map const &, Pose const &)
	parse XML (specifically in the context of the parser/scripting scheme)
virtual moves::MoverOP	fresh_instance () const
	required in the context of the parser/scripting scheme
virtual moves::MoverOP	clone () const
	required in the context of the parser/scripting scheme

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Constructor & Destructor Documentation

protocols::dna::SeparateDnaFromNonDna::SeparateDnaFromNonDna

(

)

Referenced by clone(), and fresh_instance().

protocols::dna::SeparateDnaFromNonDna::SeparateDnaFromNonDna	(	core::Real	x,
		core::Real	y,
		core::Real	z
	)

protocols::dna::SeparateDnaFromNonDna::SeparateDnaFromNonDna

(

numeric::xyzVector< core::Real > const &

xyz

)

protocols::dna::SeparateDnaFromNonDna::SeparateDnaFromNonDna

(

SeparateDnaFromNonDna const &

other

)

protocols::dna::SeparateDnaFromNonDna::~SeparateDnaFromNonDna

(

)

[virtual]

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Member Function Documentation

void protocols::dna::SeparateDnaFromNonDna::apply

(

core::pose::Pose &

pose

)

[virtual]

set up an appropriate fold tree for a non-DNA/DNA interface, and simply pull apart non-DNA and DNA

addition fold-tree considerations will have to be made if there are any 'non-DNA' chains that should stick to the DNA instead of to the non-DNA group

Implements protocols::moves::Mover.

References core::pose::Pose::conformation(), core::pose::Pose::fold_tree(), core::pose::Pose::jump(), core::pose::Pose::num_jump(), core::pose::Pose::pdb_info(), core::pose::Pose::residue_type(), core::pose::Pose::set_jump(), core::pose::Pose::total_residue(), and protocols::dna::TR().

Referenced by protocols::dna::DnaInterfacePacker::unbound_score().

moves::MoverOP protocols::dna::SeparateDnaFromNonDna::clone

(

)

const [virtual]

required in the context of the parser/scripting scheme

Reimplemented from protocols::moves::Mover.

References SeparateDnaFromNonDna().

moves::MoverOP protocols::dna::SeparateDnaFromNonDna::fresh_instance

(

)

const [virtual]

required in the context of the parser/scripting scheme

Reimplemented from protocols::moves::Mover.

References SeparateDnaFromNonDna().

std::string protocols::dna::SeparateDnaFromNonDna::get_name

(

)

const [virtual]

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

References protocols::dna::SeparateDnaFromNonDnaCreator::mover_name().

void protocols::dna::SeparateDnaFromNonDna::parse_my_tag	(	TagPtr const	,
		moves::DataMap &	,
		protocols::filters::Filters_map const &	,
		moves::Movers_map const &	,
		Pose const &
	)		[virtual]

parse XML (specifically in the context of the parser/scripting scheme)

Reimplemented from protocols::moves::Mover.

numeric::xyzVector< core::Real > protocols::dna::SeparateDnaFromNonDna::translation

(

)

const [inline]

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The documentation for this class was generated from the following files:

• src/protocols/dna/SeparateDnaFromNonDna.hh
• src/protocols/dna/SeparateDnaFromNonDna.cc