protocols::frag_picker::scores::ProfileScoreL1 Class Reference

a fragment candidate More...

#include <ProfileScoreL1.hh>

Inheritance diagram for protocols::frag_picker::scores::ProfileScoreL1:

Collaboration diagram for protocols::frag_picker::scores::ProfileScoreL1:

List of all members.

Public Member Functions
	ProfileScoreL1 (Size, Real, bool, sequence::SequenceProfileOP, utility::vector1< Size > &, Size)
	~ProfileScoreL1 ()
void	do_caching_simple (VallChunkOP)
void	do_caching (VallChunkOP)
void	clean_up ()
bool	score (FragmentCandidateOP, FragmentScoreMapOP)
bool	cached_score (FragmentCandidateOP, FragmentScoreMapOP)
Protected Attributes
Matrix	scores_
utility::vector1< Matrix >	cache_

---

Detailed Description

a fragment candidate

---

Constructor & Destructor Documentation

protocols::frag_picker::scores::ProfileScoreL1::ProfileScoreL1	(	Size	priority,
		Real	lowest_acceptable_value,
		bool	use_lowest,
		sequence::SequenceProfileOP	query_profile,
		utility::vector1< Size > &	frag_sizes,
		Size	longest_vall_chunk
	)

References cache_, protocols::frag_picker::scores::create_cache(), scores_, and protocols::frag_picker::scores::trProfScoreL1().

protocols::frag_picker::scores::ProfileScoreL1::~ProfileScoreL1

(

)

---

Member Function Documentation

bool protocols::frag_picker::scores::ProfileScoreL1::cached_score	(	FragmentCandidateOP	f,
		FragmentScoreMapOP	empty_map
	)		[virtual]

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References cache_, do_caching(), protocols::frag_picker::scores::FragmentScoringMethod::id_, protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_, and protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_.

void protocols::frag_picker::scores::ProfileScoreL1::clean_up

(

)

[inline, virtual]

Implements protocols::frag_picker::scores::CachingScoringMethod.

void protocols::frag_picker::scores::ProfileScoreL1::do_caching

(

VallChunkOP

chunk

)

[virtual]

Implements protocols::frag_picker::scores::CachingScoringMethod.

References cache_, do_caching_simple(), protocols::frag_picker::scores::rolling_score(), scores_, and protocols::frag_picker::scores::trProfScoreL1().

Referenced by cached_score().

void protocols::frag_picker::scores::ProfileScoreL1::do_caching_simple

(

VallChunkOP

chunk

)

References score(), scores_, and protocols::frag_picker::scores::trProfScoreL1().

Referenced by do_caching().

bool protocols::frag_picker::scores::ProfileScoreL1::score	(	FragmentCandidateOP	f,
		FragmentScoreMapOP	empty_map
	)		[virtual]

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References protocols::frag_picker::scores::FragmentScoringMethod::id_, protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_, and protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_.

Referenced by do_caching_simple().

---

Member Data Documentation

utility::vector1< Matrix > protocols::frag_picker::scores::ProfileScoreL1::cache_ [protected]

Referenced by cached_score(), do_caching(), and ProfileScoreL1().

Matrix protocols::frag_picker::scores::ProfileScoreL1::scores_ [protected]

Referenced by do_caching(), do_caching_simple(), and ProfileScoreL1().

---

The documentation for this class was generated from the following files:

• src/protocols/frag_picker/scores/ProfileScoreL1.hh
• src/protocols/frag_picker/scores/ProfileScoreL1.cc