core::fragment::UpJumpSRFD Class Reference

#include <JumpSRFD.hh>

Inheritance diagram for core::fragment::UpJumpSRFD:

Collaboration diagram for core::fragment::UpJumpSRFD:

List of all members.

Public Member Functions
	UpJumpSRFD (char sequence= 'X')
SingleResidueFragDataOP	clone () const
	clone
virtual SingleResidueFragDataOP	create () const
	create a new instance of this object
virtual bool	apply (pose::Pose &, Size const, Frame const &) const
	insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos );
virtual bool	apply (kinematics::MoveMap const &, pose::Pose &, Size const, Frame const &) const
	insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos ) for dofs that are allowed to move in the MoveMap
virtual bool	apply_ss (std::string &, Size, Frame const &) const
	insert fragment_data sec-struct into ss-string at position seq_pos
bool	steal (pose::Pose const &, Size, Frame const &)
	insert fragment_data into pose at position seq_pos
bool	is_compatible (SingleResidueFragData const &) const
	check weather SRFD applies to same dofs and is of same type
bool	is_applicable (kinematics::MoveMap const &, Size) const
	check whether dofs can be moved
virtual std::string	type () const
virtual bool	apply (pose::Pose &, Size) const
	insert fragment_data into pose at position seq_pos
virtual bool	apply (kinematics::MoveMap const &, pose::Pose &, Size const ) const
	for UpJumpSRFD this function should never be called, instead use Frame version
virtual bool	apply_ss (std::string &, Size) const
	insert fragment_data sec-struct into ss-string at position seq_pos
virtual bool	steal (pose::Pose const &, Size)
	insert fragment_data into pose at position seq_pos
Static Public Member Functions
static std::string	_static_type_name ()

---

Constructor & Destructor Documentation

core::fragment::UpJumpSRFD::UpJumpSRFD

(

char

sequence = 'X'

)

[inline]

Referenced by clone(), and create().

---

Member Function Documentation

static std::string core::fragment::UpJumpSRFD::_static_type_name

(

)

[inline, static]

Reimplemented from core::fragment::SingleResidueFragData.

Referenced by core::fragment::FragFactory::FragFactory(), and type().

virtual bool core::fragment::UpJumpSRFD::apply	(	pose::Pose &	pose,
		Size	intra_frame_pos,
		Frame const &	frame
	)		const [inline, virtual]

insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos );

Reimplemented from core::fragment::SingleResidueFragData.

virtual bool core::fragment::UpJumpSRFD::apply	(	kinematics::MoveMap const &	movemap,
		pose::Pose &	pose,
		Size	intra_frame_pos,
		Frame const &	frame
	)		const [inline, virtual]

insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos ) for dofs that are allowed to move in the MoveMap

Reimplemented from core::fragment::SingleResidueFragData.

virtual bool core::fragment::UpJumpSRFD::apply	(	pose::Pose &	,
		Size	seq_pos
	)		const [inline, virtual]

insert fragment_data into pose at position seq_pos

Implements core::fragment::SingleResidueFragData.

virtual bool core::fragment::UpJumpSRFD::apply	(	kinematics::MoveMap const &	,
		pose::Pose &	,
		Size	const
	)		const [inline, virtual]

for UpJumpSRFD this function should never be called, instead use Frame version

Returns:

always false

Warning:

will trigger a false runtime assert

Implements core::fragment::SingleResidueFragData.

virtual bool core::fragment::UpJumpSRFD::apply_ss	(	std::string &	ss,
		Size	intra_frame_pos,
		Frame const &	frame
	)		const [inline, virtual]

insert fragment_data sec-struct into ss-string at position seq_pos

Reimplemented from core::fragment::SingleResidueFragData.

virtual bool core::fragment::UpJumpSRFD::apply_ss	(	std::string &	,
		Size	seq_pos
	)		const [inline, virtual]

insert fragment_data sec-struct into ss-string at position seq_pos

Implements core::fragment::SingleResidueFragData.

SingleResidueFragDataOP core::fragment::UpJumpSRFD::clone

(

)

const [inline, virtual]

clone

Implements core::fragment::SingleResidueFragData.

References UpJumpSRFD().

virtual SingleResidueFragDataOP core::fragment::UpJumpSRFD::create

(

)

const [inline, virtual]

create a new instance of this object

Implements core::fragment::SingleResidueFragData.

References UpJumpSRFD().

bool core::fragment::UpJumpSRFD::is_applicable	(	kinematics::MoveMap const &	,
		Size	pos
	)		const [inline, virtual]

check whether dofs can be moved

Implements core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::is_compatible

(

SingleResidueFragData const &

)

const [virtual]

check weather SRFD applies to same dofs and is of same type

Implements core::fragment::SingleResidueFragData.

virtual bool core::fragment::UpJumpSRFD::steal	(	pose::Pose const &	pose,
		Size	seq_pos
	)		[inline, virtual]

insert fragment_data into pose at position seq_pos

Implements core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::steal	(	pose::Pose const &	pose,
		Size	intra_frame_pos,
		Frame const &	frame
	)		[inline, virtual]

insert fragment_data into pose at position seq_pos

Reimplemented from core::fragment::SingleResidueFragData.

virtual std::string core::fragment::UpJumpSRFD::type

(

)

const [inline, virtual]

Reimplemented from core::fragment::SingleResidueFragData.

References _static_type_name().

---

The documentation for this class was generated from the following files:

• src/core/fragment/JumpSRFD.hh
• src/core/fragment/JumpSRFD.cc