Rosetta 3.4
Public Types | Public Member Functions
core::scoring::methods::MembraneEnvPenalties Class Reference

#include <MembraneEnvPenalties.hh>

Inheritance diagram for core::scoring::methods::MembraneEnvPenalties:
Inheritance graph
[legend]
Collaboration diagram for core::scoring::methods::MembraneEnvPenalties:
Collaboration graph
[legend]

List of all members.

Public Types

typedef WholeStructureEnergy parent

Public Member Functions

 MembraneEnvPenalties ()
 c-tor
virtual EnergyMethodOP clone () const
 clone
void finalize_total_energy (pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const
 Calculate the RMS difference between native_pose_ (provided by the option -in::file::native and the given Pose. The actual energy calculation is the difference between the RMSD and the target RMSD. Target RMSD is specified the option -score::rms_target.
void indicate_required_context_graphs (utility::vector1< bool > &) const
 Indicate in the context-graphs-required list which context-graphs this energy method requires that the Pose maintain when doing neighbor evaluation. Context graphs are allowed.

Member Typedef Documentation


Constructor & Destructor Documentation

core::scoring::methods::MembraneEnvPenalties::MembraneEnvPenalties ( )

c-tor

Referenced by clone().


Member Function Documentation

EnergyMethodOP core::scoring::methods::MembraneEnvPenalties::clone ( ) const [virtual]
void core::scoring::methods::MembraneEnvPenalties::finalize_total_energy ( pose::Pose pose,
ScoreFunction const &  ,
EnergyMap totals 
) const [virtual]

Calculate the RMS difference between native_pose_ (provided by the option -in::file::native and the given Pose. The actual energy calculation is the difference between the RMSD and the target RMSD. Target RMSD is specified the option -score::rms_target.

Reimplemented from core::scoring::methods::EnergyMethod.

References core::scoring::MembranePotential::finalize(), core::scoring::Menv_non_helix, core::scoring::MembranePotential::Menv_penalties(), core::scoring::Menv_termini, core::scoring::Menv_tm_proj, core::scoring::MembranePotential::non_helix_in_membrane_penalty(), core::scoring::MembranePotential::termini_penalty(), and core::scoring::MembranePotential::tm_projection_penalty().

void core::scoring::methods::MembraneEnvPenalties::indicate_required_context_graphs ( utility::vector1< bool > &  context_graphs_required) const [inline, virtual]

Indicate in the context-graphs-required list which context-graphs this energy method requires that the Pose maintain when doing neighbor evaluation. Context graphs are allowed.

Implements core::scoring::methods::EnergyMethod.


The documentation for this class was generated from the following files:
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines