core::scoring::methods::MembraneEnvPenalties Class Reference

#include <MembraneEnvPenalties.hh>

Inheritance diagram for core::scoring::methods::MembraneEnvPenalties:

Collaboration diagram for core::scoring::methods::MembraneEnvPenalties:

List of all members.

Public Types
typedef WholeStructureEnergy	parent
Public Member Functions
	MembraneEnvPenalties ()
	c-tor
virtual EnergyMethodOP	clone () const
	clone
void	finalize_total_energy (pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const
	Calculate the RMS difference between native_pose_ (provided by the option -in::file::native and the given Pose. The actual energy calculation is the difference between the RMSD and the target RMSD. Target RMSD is specified the option -score::rms_target.
void	indicate_required_context_graphs (utility::vector1< bool > &) const
	Indicate in the context-graphs-required list which context-graphs this energy method requires that the Pose maintain when doing neighbor evaluation. Context graphs are allowed.

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Member Typedef Documentation

typedef WholeStructureEnergy core::scoring::methods::MembraneEnvPenalties::parent

Reimplemented from core::scoring::methods::WholeStructureEnergy.

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Constructor & Destructor Documentation

core::scoring::methods::MembraneEnvPenalties::MembraneEnvPenalties

(

)

c-tor

Referenced by clone().

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Member Function Documentation

EnergyMethodOP core::scoring::methods::MembraneEnvPenalties::clone

(

)

const [virtual]

clone

Implements core::scoring::methods::EnergyMethod.

References MembraneEnvPenalties().

void core::scoring::methods::MembraneEnvPenalties::finalize_total_energy	(	pose::Pose &	pose,
		ScoreFunction const &	,
		EnergyMap &	totals
	)		const [virtual]

Calculate the RMS difference between native_pose_ (provided by the option -in::file::native and the given Pose. The actual energy calculation is the difference between the RMSD and the target RMSD. Target RMSD is specified the option -score::rms_target.

Reimplemented from core::scoring::methods::EnergyMethod.

References core::scoring::MembranePotential::finalize(), core::scoring::Menv_non_helix, core::scoring::MembranePotential::Menv_penalties(), core::scoring::Menv_termini, core::scoring::Menv_tm_proj, core::scoring::MembranePotential::non_helix_in_membrane_penalty(), core::scoring::MembranePotential::termini_penalty(), and core::scoring::MembranePotential::tm_projection_penalty().

void core::scoring::methods::MembraneEnvPenalties::indicate_required_context_graphs

(

utility::vector1< bool > &

context_graphs_required

)

const [inline, virtual]

Indicate in the context-graphs-required list which context-graphs this energy method requires that the Pose maintain when doing neighbor evaluation. Context graphs are allowed.

Implements core::scoring::methods::EnergyMethod.

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The documentation for this class was generated from the following files:

• src/core/scoring/methods/MembraneEnvPenalties.hh
• src/core/scoring/methods/MembraneEnvPenalties.cc