Rosetta 3.4
Namespaces | Functions
doc/developer/example_protocol.cc File Reference
#include <core/pose/Pose.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskOperation.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/moves/MinMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/PackRotamersMover.hh>
#include <protocols/moves/RotamerTrialsMover.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/moves/ReturnSidechainMover.hh>
#include <protocols/moves/TaskAwareMinMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/moves/BackboneMover.hh>
#include <protocols/loops/CcdLoopClosureMover.hh>
#include <protocols/loops/LoopClass.hh>
#include <protocols/geometry/RB_geometry.hh>
#include <protocols/docking/DockingProtocol.hh>
#include <protocols/toolbox/TaskOperations/RestrictToInterfaceOperation.hh>
#include <core/init.hh>
#include <core/options/util.hh>
#include <core/options/option.hh>
#include <core/util/tracer.hh>
#include <utility/exit.hh>
#include <string>
#include <sstream>

Namespaces

namespace  dddm

Functions

static util::Tracer TR ("apps.demonstration")
RealOptionKey const dddm::pert_mc_temp ("dddm::pert_mc_temp")
RealOptionKey const dddm::pert_dock_rot_mag ("dddm::pert_dock_rot_mag")
RealOptionKey const dddm::pert_dock_trans_mag ("dddm::pert_dock_trans_mag")
RealOptionKey const dddm::pert_loop_temp ("dddm::pert_loop_temp")
RealOptionKey const dddm::pert_pep_small_temp ("dddm::pert_pep_small_temp")
RealOptionKey const dddm::pert_pep_small_H ("dddm::pert_pep_small_H")
RealOptionKey const dddm::pert_pep_small_L ("dddm::pert_pep_small_L")
RealOptionKey const dddm::pert_pep_small_E ("dddm::pert_pep_small_E")
RealOptionKey const dddm::pert_pep_shear_temp ("dddm::pert_pep_shear_temp")
RealOptionKey const dddm::pert_pep_shear_H ("dddm::pert_pep_shear_H")
RealOptionKey const dddm::pert_pep_shear_L ("dddm::pert_pep_shear_L")
RealOptionKey const dddm::pert_pep_shear_E ("dddm::pert_pep_shear_E")
RealOptionKey const dddm::pert_ter_small_temp ("dddm::pert_ter_small_temp")
RealOptionKey const dddm::pert_ter_small_H ("dddm::pert_ter_small_H")
RealOptionKey const dddm::pert_ter_small_L ("dddm::pert_ter_small_L")
RealOptionKey const dddm::pert_ter_small_E ("dddm::pert_ter_small_E")
RealOptionKey const dddm::pert_ter_shear_temp ("dddm::pert_ter_shear_temp")
RealOptionKey const dddm::pert_ter_shear_H ("dddm::pert_ter_shear_H")
RealOptionKey const dddm::pert_ter_shear_L ("dddm::pert_ter_shear_L")
RealOptionKey const dddm::pert_ter_shear_E ("dddm::pert_ter_shear_E")
RealOptionKey const dddm::pert_pep_num_rep ("dddm::pert_pep_num_rep")
RealOptionKey const dddm::pert_ter_num_rep ("dddm::pert_pep_num_rep")
IntegerOptionKey const dddm::pert_num ("dddm::pert_num")
RealOptionKey const dddm::desn_mc_temp ("dddm::desn_mc_temp")
FileOptionKey const dddm::loops_file ("dddm:loops_file")
void setup_pert_foldtree (core::pose::Pose &pose, protocols::loops::Loops &myloops)
int main (int argc, char *argv[])

Function Documentation

int main ( int  argc,
char *  argv[] 
)
void setup_pert_foldtree ( core::pose::Pose pose,
protocols::loops::Loops myloops 
)
static util::Tracer TR ( "apps.demonstration"  ) [static]
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