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src/protocols/abinitio/ClassicAbinitio.cc File Reference

ab-initio fragment assembly protocol for proteins More...

#include <protocols/abinitio/ClassicAbinitio.hh>
#include <protocols/simple_moves/SymmetricFragmentMover.hh>
#include <protocols/simple_moves/GunnCost.hh>
#include <core/pose/Pose.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/types.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/moves/WhileMover.hh>
#include <protocols/abinitio/AllResiduesChanged.hh>
#include <ObjexxFCL/string.functions.hh>
#include <utility/exit.hh>
#include <utility/vector1.fwd.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <utility/io/ozstream.hh>
#include <numeric/numeric.functions.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/templates.OptionKeys.gen.hh>
#include <cstdlib>
#include <string>
#include <protocols/moves/MonteCarlo.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>

Classes

class  protocols::abinitio::hConvergenceCheck

Namespaces

namespace  protocols
 

The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.


namespace  protocols::abinitio

Typedefs

typedef
utility::pointer::owning_ptr
< hConvergenceCheck > 
protocols::abinitio::hConvergenceCheckOP

Functions

static basic::Tracer tr ("protocols.abinitio")
bool protocols::abinitio::contains_stageid (utility::vector1< ClassicAbinitio::StageID > vec, ClassicAbinitio::StageID query)

Detailed Description

ab-initio fragment assembly protocol for proteins

Detailed:
Contains currently: Classic Abinitio
Author:
Oliver Lange
James Thompson
Mike Tyka

Function Documentation

static basic::Tracer tr ( "protocols.abinitio"  ) [static]
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