core::fragment::IndependentBBTorsionSRFD Class Reference

A version of BBTorsionSRFD that considers each torsion independently during is_applicable() and apply() calls when passed a MoveMap (vs the all-torsions-must-be-moveable-or-nothing-is behavior in the original BBTorsionSRFD). More...

#include <IndependentBBTorsionSRFD.hh>

Inheritance diagram for core::fragment::IndependentBBTorsionSRFD:

Collaboration diagram for core::fragment::IndependentBBTorsionSRFD:

List of all members.

Public Types
typedef core::Size	Size
typedef core::kinematics::MoveMap	MoveMap
typedef core::pose::Pose	Pose
Public Member Functions
	IndependentBBTorsionSRFD ()
	default constructor
	IndependentBBTorsionSRFD (Size const n_bbtorsions, char const secstruct, char const sequence)
	constructor
	IndependentBBTorsionSRFD (IndependentBBTorsionSRFD const &rval)
	copy constructor
virtual	~IndependentBBTorsionSRFD ()
	default destructor
IndependentBBTorsionSRFD &	operator= (IndependentBBTorsionSRFD const &rval)
	copy assignment
virtual SingleResidueFragDataOP	clone () const
	clone this object
virtual SingleResidueFragDataOP	create () const
	create a new instance of this object
virtual bool	apply (MoveMap const &movemap, Pose &pose, Size const seqpos) const
	apply only torsions in this fragment marked as moveable in the given MoveMap
virtual bool	is_applicable (MoveMap const &movemap, Size seqpos) const
	is at least one torsion marked as moveable in the given MoveMap?

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Detailed Description

A version of BBTorsionSRFD that considers each torsion independently during is_applicable() and apply() calls when passed a MoveMap (vs the all-torsions-must-be-moveable-or-nothing-is behavior in the original BBTorsionSRFD).

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Member Typedef Documentation

typedef core::kinematics::MoveMap core::fragment::IndependentBBTorsionSRFD::MoveMap

typedef core::pose::Pose core::fragment::IndependentBBTorsionSRFD::Pose

typedef core::Size core::fragment::IndependentBBTorsionSRFD::Size

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Constructor & Destructor Documentation

core::fragment::IndependentBBTorsionSRFD::IndependentBBTorsionSRFD

(

)

default constructor

Referenced by clone(), and create().

core::fragment::IndependentBBTorsionSRFD::IndependentBBTorsionSRFD	(	Size const	n_bbtorsions,
		char const	secstruct,
		char const	sequence
	)

constructor

Parameters:

[in]	n_bbtorsions	Number of backbone torsions.
[in]	secstruct	The single character secondary structure type.
[in]	sequence	The single character sequence type.

core::fragment::IndependentBBTorsionSRFD::IndependentBBTorsionSRFD

(

IndependentBBTorsionSRFD const &

rval

)

copy constructor

core::fragment::IndependentBBTorsionSRFD::~IndependentBBTorsionSRFD

(

)

[virtual]

default destructor

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Member Function Documentation

bool core::fragment::IndependentBBTorsionSRFD::apply	(	MoveMap const &	movemap,
		Pose &	pose,
		Size const	seqpos
	)		const [virtual]

apply only torsions in this fragment marked as moveable in the given MoveMap

Parameters:

[in]	movemap	Check for moveable torsions in this MoveMap.
[in,out]	pose	The Pose to modify.
[in]	seqpos	Insert at this sequence position.

Returns:

True if at least one torsion inserted and second level superclass SecstructSRFD::apply() succeeded, otherwise false.

Parameters:

[in]	movemap	Check for moveable torsions in this MoveMap.
[in,out]	pose	The Pose to modify.
[in]	seqpos	Insert at this sequence position.

Returns:

True if at least one torsion inserted and second level superclass SecstructSRFD::apply() succeeded, otherwise false.

Skips the initial call to primary superclass BBTorsionSRFD::apply() because it contains all-or-nothing behavior we want to override. Instead will go directly to second level SecstructSRFD::apply(), and afterwards execute the rest of the procedure.

Reimplemented from core::fragment::BBTorsionSRFD.

References core::fragment::SecstructSRFD::apply(), core::id::BB, core::kinematics::MoveMap::get(), core::fragment::BBTorsionSRFD::nbb(), core::pose::Pose::set_torsion(), and core::fragment::BBTorsionSRFD::torsion().

SingleResidueFragDataOP core::fragment::IndependentBBTorsionSRFD::clone

(

)

const [virtual]

clone this object

Reimplemented from core::fragment::BBTorsionSRFD.

References IndependentBBTorsionSRFD().

SingleResidueFragDataOP core::fragment::IndependentBBTorsionSRFD::create

(

)

const [virtual]

create a new instance of this object

Reimplemented from core::fragment::BBTorsionSRFD.

References IndependentBBTorsionSRFD().

bool core::fragment::IndependentBBTorsionSRFD::is_applicable	(	MoveMap const &	movemap,
		Size	seqpos
	)		const [virtual]

is at least one torsion marked as moveable in the given MoveMap?

Parameters:

[in]	movemap	Check for moveable torsions in this MoveMap.
[in]	seqpos	Check at this sequence position.

Returns:

True if at least one torsion moveable and second level superclass SecstructSRFD::is_applicable(), otherwise False.

Parameters:

[in]	movemap	Check for moveable torsions in this MoveMap.
[in]	seqpos	Check at this sequence position.

Returns:

True if at least one torsion moveable and second level superclass SecstructSRFD::is_applicable(), otherwise False.

Skips the initial call to primary superclass BBTorsionSRFD::is_applicable() because it contains all-or-nothing behavior we want to override. Instead will go directly to second level SecstructSRFD::is_applicable(), and afterwards execute the rest of the procedure.

Reimplemented from core::fragment::BBTorsionSRFD.

References core::id::BB, core::kinematics::MoveMap::get(), core::fragment::SecstructSRFD::is_applicable(), and core::fragment::BBTorsionSRFD::nbb().

IndependentBBTorsionSRFD & core::fragment::IndependentBBTorsionSRFD::operator=

(

IndependentBBTorsionSRFD const &

rval

)

copy assignment

References core::fragment::BBTorsionSRFD::operator=().

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The documentation for this class was generated from the following files:

• src/core/fragment/IndependentBBTorsionSRFD.hh
• src/core/fragment/IndependentBBTorsionSRFD.cc