protocols::antibody::LoopRlxMover Class Reference

Closes only one CDR onto a framework. More...

#include <GraftMover.hh>

Inheritance diagram for protocols::antibody::LoopRlxMover:

Collaboration diagram for protocols::antibody::LoopRlxMover:

List of all members.

Public Member Functions
	LoopRlxMover (core::Size query_start, core::Size query_end)
void	set_default ()
virtual void	apply (core::pose::Pose &pose_in)
	relaxes the region specified
virtual std::string	get_name () const
	Each derived class must specify its name. The class name.
void	setup_packer_task (core::pose::Pose &pose_in)
void	enable_benchmark_mode (bool setting)
	enable benchmark mode

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Detailed Description

Closes only one CDR onto a framework.

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Constructor & Destructor Documentation

protocols::antibody::LoopRlxMover::LoopRlxMover	(	core::Size	query_start,
		core::Size	query_end
	)

References set_default().

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Member Function Documentation

void protocols::antibody::LoopRlxMover::apply

(

core::pose::Pose &

pose_in

)

[virtual]

relaxes the region specified

LoopRlxMover::apply

Detailed: This is all done in high resolution.Hence there are no rigid

body moves relative to the docking partners. Only small moves are carried out here to see if there are better fits. Repacking is carried out extensively after each move.

Parameters:

[in]

pose,loop

begin position, loop end position

Global Read: none

Global Write: none

Remarks:

References:

Authors:

Aroop 05/12/2010

Last Modified: 05/12/2010

Implements protocols::moves::Mover.

References core::pose::add_variant_type_to_pose_residue(), protocols::loops::loop_closure::ccd::ccd_moves(), core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, core::pose::Pose::fold_tree(), core::conformation::Residue::has_variant_type(), core::pose::Pose::is_fullatom(), core::conformation::Residue::is_upper_terminus(), core::pose::Pose::residue(), protocols::loops::select_loop_residues(), setup_packer_task(), protocols::antibody::simple_one_loop_fold_tree(), core::pose::Pose::total_residue(), and protocols::TR().

void protocols::antibody::LoopRlxMover::enable_benchmark_mode

(

bool

setting

)

[inline]

enable benchmark mode

std::string protocols::antibody::LoopRlxMover::get_name

(

)

const [virtual]

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

void protocols::antibody::LoopRlxMover::set_default

(

)

References core::scoring::chainbreak, core::scoring::ScoreFunctionFactory::create_score_function(), and core::scoring::overlap_chainbreak.

Referenced by LoopRlxMover().

void protocols::antibody::LoopRlxMover::setup_packer_task

(

core::pose::Pose &

pose_in

)

References core::pack::dunbrack::load_unboundrot(), and protocols::TR().

Referenced by apply().

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The documentation for this class was generated from the following files:

• src/protocols/antibody/GraftMover.hh
• src/protocols/antibody/GraftMover.cc