, including all inherited members.
| atomic_interaction_cutoff() const | core::scoring::methods::WholeStructureEnergy | [inline, virtual] |
| cen_cfg_file_ | core::scoring::saxs::SAXSEnergy | [static] |
| clone() const | core::scoring::saxs::SAXSEnergy | [inline, virtual] |
| compute_intensities(const core::pose::Pose &, utility::vector1< Real > &) const | core::scoring::saxs::SAXSEnergy | [protected] |
| compute_zero_intensity() const | core::scoring::saxs::SAXSEnergy | |
| count_scoring_atoms() | core::scoring::saxs::SAXSEnergy | [inline] |
| create_energy_method(methods::EnergyMethodOptions const &) const | core::scoring::saxs::SAXSEnergy | [inline] |
| defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
| EnergyMethod(EnergyMethod const &src) | core::scoring::methods::EnergyMethod | |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const | core::scoring::methods::EnergyMethod | [virtual] |
| fa_cfg_file_ | core::scoring::saxs::SAXSEnergy | [static] |
| finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const | core::scoring::saxs::SAXSEnergy | [virtual] |
| fit_intensities(const utility::vector1< Real > &, const utility::vector1< Real > &, utility::vector1< Real > &) const | core::scoring::saxs::SAXSEnergy | [protected] |
| get_pose_intensities() | core::scoring::saxs::SAXSEnergy | [inline] |
| get_q() | core::scoring::saxs::SAXSEnergy | [inline] |
| get_reference_intensities() | core::scoring::saxs::SAXSEnergy | [inline] |
| indicate_required_context_graphs(utility::vector1< bool > &) const | core::scoring::saxs::SAXSEnergy | [inline, virtual] |
| init_ff(const std::string &) | core::scoring::saxs::SAXSEnergy | [protected] |
| method_type() const | core::scoring::methods::WholeStructureEnergy | [virtual] |
| minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| parent typedef | core::scoring::methods::WholeStructureEnergy | |
| prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const | core::scoring::methods::EnergyMethod | [virtual] |
| read_intensities(std::string &, utility::vector1< Real > &) const | core::scoring::saxs::SAXSEnergy | [protected] |
| read_spectrum(std::string &, utility::vector1< Real > &, utility::vector1< Real > &) const | core::scoring::saxs::SAXSEnergy | [protected] |
| rehash_form_factors(const core::pose::Pose &pose) const | core::scoring::saxs::SAXSEnergy | [protected] |
| saxs_score_variant_ | core::scoring::saxs::SAXSEnergy | [protected] |
| SAXSEnergy(std::string &, core::chemical::ResidueTypeSetCAP, ScoreType, SAXSEnergyCreator *) | core::scoring::saxs::SAXSEnergy | |
| SAXSEnergy(const std::string &, const utility::vector1< Real > &, const utility::vector1< Real > &, ScoreType, SAXSEnergyCreator *) | core::scoring::saxs::SAXSEnergy | |
| score_types() const | core::scoring::methods::EnergyMethod | [inline] |
| set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | [protected] |
| set_up_q(const utility::vector1< Real > &) | core::scoring::saxs::SAXSEnergy | [protected] |
| set_up_q() | core::scoring::saxs::SAXSEnergy | [protected] |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | [virtual] |
| setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| setup_for_scoring(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| the_config_file_ | core::scoring::saxs::SAXSEnergy | [protected] |
| total_energy(const pose::Pose &pose) const | core::scoring::saxs::SAXSEnergy | |
| update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | [virtual] |
| WholeStructureEnergy(EnergyMethodCreatorOP) | core::scoring::methods::WholeStructureEnergy | |
| ~EnergyMethod() | core::scoring::methods::EnergyMethod | [virtual] |
| ~SAXSEnergy() | core::scoring::saxs::SAXSEnergy | [inline, virtual] |
| ~WholeStructureEnergy() | core::scoring::methods::WholeStructureEnergy | [inline, virtual] |
1.7.4
