protocols::match::output::UpstreamDownstreamCollisionFilter Class Reference

This class is used to detect collisions between upstream residues and downstream poses. More...

#include <UpstreamDownstreamCollisionFilter.hh>

Inheritance diagram for protocols::match::output::UpstreamDownstreamCollisionFilter:

Collaboration diagram for protocols::match::output::UpstreamDownstreamCollisionFilter:

List of all members.

Public Types
typedef core::Real	Real
typedef MatchCollisionFilter	parent
Public Member Functions
	UpstreamDownstreamCollisionFilter (std::string filter_name, UpstreamHitCacherOP coordinate_cacher)
virtual	~UpstreamDownstreamCollisionFilter ()
void	set_downstream_pose (core::pose::Pose const &downstream_pose)
void	set_num_geometric_constraints (Size n_geomcst)
void	set_chemical_bond_from_upstream_to_downstream (Size geomcst_id)
	Do not perform any collision detection between an upstream residue and the downstream pose if there is a chemical bond between them.
void	set_downstream_builder (Size geomcst_id, downstream::DownstreamBuilderCOP builder)
void	set_tolerated_overlap (Real setting)
virtual bool	passes_filter (match const &m) const
	Returns true if there is at least one placement of the downstream partner which does not exceed the collision tolerance with any of the upstream residues.
virtual bool	passes_filter (match_dspos1 const &m) const
	Returns true if the specified downstream position does not collide more than tolerated with any of the upstream residues.
bool	passes_hardsphere_filter (core::Size geomcst_up, core::Size geomcst_down, Hit const &upstream_hit, Hit const &downstream_hit) const
bool	passes_hardsphere_filter (core::Size geomcst, Hit const &upstream_hit, utility::vector1< core::Vector > const &coords) const

---

Detailed Description

This class is used to detect collisions between upstream residues and downstream poses.

---

Member Typedef Documentation

typedef MatchCollisionFilter protocols::match::output::UpstreamDownstreamCollisionFilter::parent

typedef core::Real protocols::match::output::UpstreamDownstreamCollisionFilter::Real

Reimplemented from protocols::match::output::MatchCollisionFilter.

---

Constructor & Destructor Documentation

protocols::match::output::UpstreamDownstreamCollisionFilter::UpstreamDownstreamCollisionFilter	(	std::string	filter_name,
		UpstreamHitCacherOP	coordinate_cacher
	)

protocols::match::output::UpstreamDownstreamCollisionFilter::~UpstreamDownstreamCollisionFilter

(

)

[virtual]

---

Member Function Documentation

bool protocols::match::output::UpstreamDownstreamCollisionFilter::passes_filter

(

match const &

m

)

const [virtual]

Returns true if there is at least one placement of the downstream partner which does not exceed the collision tolerance with any of the upstream residues.

Implements protocols::match::output::MatchCollisionFilter.

bool protocols::match::output::UpstreamDownstreamCollisionFilter::passes_filter

(

match_dspos1 const &

m

)

const [virtual]

Returns true if the specified downstream position does not collide more than tolerated with any of the upstream residues.

Implements protocols::match::output::MatchCollisionFilter.

References protocols::match::output::MatchCollisionFilter::filter_by_lj(), and passes_hardsphere_filter().

bool protocols::match::output::UpstreamDownstreamCollisionFilter::passes_hardsphere_filter	(	core::Size	geomcst_up,
		core::Size	geomcst_down,
		Hit const &	upstream_hit,
		Hit const &	downstream_hit
	)		const

Referenced by passes_filter().

bool protocols::match::output::UpstreamDownstreamCollisionFilter::passes_hardsphere_filter	(	core::Size	geomcst,
		Hit const &	upstream_hit,
		utility::vector1< core::Vector > const &	coords
	)		const [inline]

References core::conformation::Residue::atom_type_index(), protocols::match::output::MatchCollisionFilter::bump_grid(), protocols::match::output::MatchCollisionFilter::cacher_, core::kinematics::tree::distance_squared(), core::conformation::Residue::nbr_atom(), core::conformation::Residue::nbr_radius(), core::conformation::Residue::nheavyatoms(), and protocols::match::probe_radius_for_atom_type().

void protocols::match::output::UpstreamDownstreamCollisionFilter::set_chemical_bond_from_upstream_to_downstream

(

Size

geomcst_id

)

Do not perform any collision detection between an upstream residue and the downstream pose if there is a chemical bond between them.

void protocols::match::output::UpstreamDownstreamCollisionFilter::set_downstream_builder	(	Size	geomcst_id,
		downstream::DownstreamBuilderCOP	builder
	)

void protocols::match::output::UpstreamDownstreamCollisionFilter::set_downstream_pose

(

core::pose::Pose const &

downstream_pose

)

References core::conformation::Residue::natoms(), core::pose::Pose::residue(), and core::pose::Pose::total_residue().

void protocols::match::output::UpstreamDownstreamCollisionFilter::set_num_geometric_constraints

(

Size

n_geomcst

)

void protocols::match::output::UpstreamDownstreamCollisionFilter::set_tolerated_overlap

(

Real

setting

)

[virtual]

Reimplemented from protocols::match::output::MatchCollisionFilter.

References protocols::match::output::MatchCollisionFilter::bump_grid(), protocols::match::n_probe_radii, and protocols::match::output::MatchCollisionFilter::set_tolerated_overlap().

---

The documentation for this class was generated from the following files:

• src/protocols/match/output/UpstreamDownstreamCollisionFilter.hh
• src/protocols/match/output/UpstreamDownstreamCollisionFilter.cc