Rosetta 3.4
Classes | Typedefs | Functions
protocols::simple_filters Namespace Reference

Classes

class  AbinitioBaseFilter
class  AlaScan
class  AlaScanFilterCreator
class  AtomicContactFilter
 detects atomic (<4Ang) contacts between any two atoms of two residues More...
class  AtomicContactFilterCreator
class  AtomicDistanceFilter
 detects atomic contacts between two atoms of two residues More...
class  AtomicDistanceFilterCreator
class  BatchEvaluator
class  BatchNrEvaluator
class  BuriedUnsatHbondFilter
 filters based on an upper bound # of buried unsatisfied polar residues More...
class  BuriedUnsatHbondFilterCreator
class  CamShiftEvaluator
class  CamShiftEvaluatorCreator
 creator for the CamShiftEvaluatorCreator class More...
class  ChiWellRmsdEvaluator
class  ChiWellRmsdEvaluatorCreator
 creator for the ChiWellRmsdEvaluatorCreator class More...
class  PoseMetricEvaluator
class  COFilter
class  ConservedPosMutationFilter
class  ConservedPosMutationFilterCreator
class  ContactMapEvaluator
class  ContactMapEvaluatorCreator
 creator for the ContactMapEvaluatorCreator class More...
class  DdgFilter
class  DdgFilterCreator
class  EnergyPerResidueFilter
class  EnergyPerResidueFilterCreator
class  EvaluatedTrialMover
class  ExternalEvaluator
class  ExtraScoreEvaluatorCreator
 creator for the ExtraScoreEvaluatorCreator class More...
class  HolesFilter
class  HolesFilterCreator
class  InterfaceSasaFilter
class  InterfaceSasaFilterCreator
class  JScoreEvaluator
class  JScoreEvaluatorCreator
 creator for the JScoreEvaluatorCreator class More...
class  JumpEvaluator
class  JumpNrEvaluator
class  JumpNrEvaluatorCreator
 creator for the JumpNrEvaluatorCreator class More...
class  MinValueEvaluator
class  NativeEvaluatorCreator
 creator for the NativeEvaluatorCreator class More...
class  NeighborTypeFilter
class  NeighborTypeFilterCreator
class  RegionalConnections
class  PackerNeighborGraphFilter
class  PackStatFilter
class  PackStatFilterCreator
class  PalesEvaluator
class  PalesEvaluatorCreator
 creator for the PalesEvaluatorCreator class More...
class  PDDFScoreFilter
class  PoolEvaluatorCreator
 creator for the PoolEvaluatorCreator class More...
class  PredictedBurialEvaluator
class  PredictedBurialFnEvaluatorCreator
 creator for the PredictedBurialFnEvaluatorCreator class More...
class  SelectRDC_Evaluator
class  RdcEvaluatorCreator
 creator for the RdcEvaluatorCreator class More...
class  RdcSelectEvaluatorCreator
 creator for the RdcSelectEvaluatorCreator class More...
class  RdcTargetEvaluatorCreator
 creator for the RdcTargetEvaluatorCreator class More...
class  ResidueBurialFilter
class  ResidueBurialFilterCreator
class  ResidueDistanceFilter
class  ResidueDistanceFilterCreator
class  ResiduesInInterfaceFilter
class  ResiduesInInterfaceFilterCreator
class  RGFilter
class  RmsdEvaluator
class  SelectRmsdEvaluator
class  SelectGdtEvaluator
class  SelectMaxsubEvaluator
class  SymmetricRmsdEvaluator
class  LoopRmsdEvaluator
class  RmsdEvaluatorCreator
 creator for the RmsdEvaluatorCreator class More...
class  RmsdTargetEvaluatorCreator
 creator for the RmsdTargetEvaluatorCreator class More...
class  RotamerBoltzmannWeight
class  RotamerBoltzmannWeightFilterCreator
class  RPF_ScoreEvaluator
class  SAXSScoreFilter
class  ScoreCutoffFilter
class  ScoreCutoffFilterCreator
class  ScoreEvaluator
 that rewrites the whole pss struct all previous entries will be lost... probably not what one wants... More...
class  TruncatedScoreEvaluator
class  ScoreTypeFilter
class  ScoreTypeFilterCreator
class  ShapeComplementarityFilter
class  ShapeComplementarityFilterCreator
class  SheetFilter
class  StructuralSimilarityEvaluator
class  StructureSimilarityEvaluatorCreator
 creator for the StructureSimilarityEvaluatorCreator class More...
class  TerminusDistanceFilter
class  TerminusDistanceFilterCreator

Typedefs

typedef
utility::pointer::owning_ptr
< ConservedPosMutationFilter
ConservedPosMutationFilterOP
typedef
utility::pointer::owning_ptr
< ConservedPosMutationFilter
const > 
ConservedPosMutationFilterCOP
typedef
utility::pointer::owning_ptr
< EvaluatedTrialMover
EvaluatedTrialMoverOP
typedef
utility::pointer::owning_ptr
< HolesFilter
HolesFilterOP
typedef
utility::pointer::owning_ptr
< HolesFilter const > 
HolesFilterCOP
typedef
utility::pointer::owning_ptr
< PackerNeighborGraphFilter
PackerNeighborGraphFilterOP
typedef
utility::pointer::owning_ptr
< PackerNeighborGraphFilter
const > 
PackerNeighborGraphFilterCOP
typedef
utility::pointer::owning_ptr
< PackStatFilter
PackStatFilterOP
typedef
utility::pointer::owning_ptr
< PackStatFilter const > 
PackStatFilterCOP
typedef
utility::pointer::owning_ptr
< PDDFScoreFilter
PDDFScoreFilterOP
typedef
utility::pointer::owning_ptr
< PDDFScoreFilter const > 
PDDFScoreFilterCOP
typedef
utility::pointer::owning_ptr
< SelectRDC_Evaluator
SelectRDC_EvaluatorOP
typedef
utility::pointer::owning_ptr
< SelectRDC_Evaluator const > 
SelectRDC_EvaluatorCOP
typedef
utility::pointer::owning_ptr
< RotamerBoltzmannWeight
RotamerBoltzmannWeightFilterOP
typedef
utility::pointer::owning_ptr
< RotamerBoltzmannWeight const > 
RotamerBoltzmannWeightFilterCOP
typedef
utility::pointer::owning_ptr
< SAXSScoreFilter
SAXSScoreFilterOP
typedef
utility::pointer::owning_ptr
< SAXSScoreFilter const > 
SAXSScoreFilterCOP
typedef
utility::pointer::owning_ptr
< ScoreCutoffFilter
ScoreCutoffFilterOP
typedef
utility::pointer::owning_ptr
< ScoreCutoffFilter const > 
ScoreCutoffFilterCOP
typedef
utility::pointer::owning_ptr
< ShapeComplementarityFilter
ShapeComplementarityFilterOP
typedef
utility::pointer::owning_ptr
< ShapeComplementarityFilter
const > 
ShapeComplementarityFilterCOP
typedef
utility::pointer::owning_ptr
< StructuralSimilarityEvaluator
StructuralSimilarityEvaluatorOP
typedef
utility::pointer::owning_ptr
< StructuralSimilarityEvaluator
const > 
StructuralSimilarityEvaluatorCOP

Functions

static basic::Tracer TR ("protocols.simple_filters.AlaScan")
static basic::Tracer TR ("protocols.filters.AtomicContactFilter")
static basic::Tracer TR ("protocols.filters.AtomicDistanceFilter")
static basic::Tracer buried_unsat_hbond_filter_tracer ("protocols.simple_filters.BuriedUnsatHbondFilter")
boost::dynamic_bitset get_contact_features (core::pose::Pose const &pose, core::Real const dist_threshold, std::string const &atom_name, core::Size const min_seqsep=12, core::Size const skip_res=0)
core::Real pct_features_in_common (boost::dynamic_bitset<> const &set1, boost::dynamic_bitset<> const &set2)
static basic::Tracer TR ("protocols.simple_filters.DdgFilter")
static basic::Tracer energy_per_residue_filter_tracer ("protocols.simple_filters.EnergyPerResidueFilter")
static basic::Tracer interface_sasa_filter_tracer ("protocols.simple_filters.InterfaceSasaFilter")
static basic::Tracer neighbor_type_filter_tracer ("protocols.simple_filters.NeighborTypeFilter")
static basic::Tracer residue_burial_filter_tracer ("protocols.simple_filters.ResidueBurialFilter")
static basic::Tracer residue_distance_filter_tracer ("protocols.simple_filters.ResidueDistanceFilter")
static basic::Tracer residues_in_interface_tracer ("protocols.simple_filters.ResiduesInInterfaceFilter")
static basic::Tracer TR ("protocols.simple_filters.RotamerBoltzmannWeight")
static basic::Tracer score_type_filter_tracer ("protocols.simple_filters.ScoreTypeFilter")
static basic::Tracer TR ("protocols.simple_filters.TerminusDistanceFilter")

Typedef Documentation


Function Documentation

static basic::Tracer protocols::simple_filters::buried_unsat_hbond_filter_tracer ( "protocols.simple_filters.BuriedUnsatHbondFilter"  ) [static]
static basic::Tracer protocols::simple_filters::energy_per_residue_filter_tracer ( "protocols.simple_filters.EnergyPerResidueFilter"  ) [static]
boost::dynamic_bitset protocols::simple_filters::get_contact_features ( core::pose::Pose const &  pose,
core::Real const  dist_threshold,
std::string const &  atom_name,
core::Size const  min_seqsep = 12,
core::Size const  skip_res = 0 
)
static basic::Tracer protocols::simple_filters::interface_sasa_filter_tracer ( "protocols.simple_filters.InterfaceSasaFilter"  ) [static]
static basic::Tracer protocols::simple_filters::neighbor_type_filter_tracer ( "protocols.simple_filters.NeighborTypeFilter"  ) [static]
core::Real protocols::simple_filters::pct_features_in_common ( boost::dynamic_bitset<> const &  set1,
boost::dynamic_bitset<> const &  set2 
)
static basic::Tracer protocols::simple_filters::residue_burial_filter_tracer ( "protocols.simple_filters.ResidueBurialFilter"  ) [static]
static basic::Tracer protocols::simple_filters::residue_distance_filter_tracer ( "protocols.simple_filters.ResidueDistanceFilter"  ) [static]
static basic::Tracer protocols::simple_filters::residues_in_interface_tracer ( "protocols.simple_filters.ResiduesInInterfaceFilter"  ) [static]
static basic::Tracer protocols::simple_filters::score_type_filter_tracer ( "protocols.simple_filters.ScoreTypeFilter"  ) [static]
static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.AlaScan"  ) [static]
static basic::Tracer protocols::simple_filters::TR ( "protocols.filters.AtomicDistanceFilter"  ) [static]
static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.RotamerBoltzmannWeight"  ) [static]
static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.DdgFilter"  ) [static]
static basic::Tracer protocols::simple_filters::TR ( "protocols.filters.AtomicContactFilter"  ) [static]
static basic::Tracer protocols::simple_filters::TR ( "protocols.simple_filters.TerminusDistanceFilter"  ) [static]
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