Rosetta 3.4
Namespaces | Functions
src/protocols/rosetta_scripts/util.hh File Reference
#include <core/pose/Pose.fwd.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <core/types.hh>
#include <protocols/moves/DataMap.fwd.hh>
#include <core/pack/task/TaskFactory.fwd.hh>
#include <core/pack/task/operation/TaskOperation.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <utility/tag/Tag.fwd.hh>
#include <utility/vector1.fwd.hh>
#include <string>
#include <set>
#include <utility/vector1.hh>

Namespaces

namespace  protocols
 

The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.


namespace  protocols::rosetta_scripts

Functions

core::Size protocols::rosetta_scripts::get_resnum (utility::tag::TagPtr const tag_ptr, core::pose::Pose const &pose, std::string const &prefix)
core::Size protocols::rosetta_scripts::parse_resnum (std::string const &resnum, core::pose::Pose const &pose)
 Extracts a residue number from a string. Recognizes two forms of numbering:
vector1< Sizeprotocols::rosetta_scripts::get_resnum_list (utility::tag::TagPtr const tag_ptr, string const &tag, pose::Pose const &pose)
 Extracts a list of residue numbers from a tag.
set< Sizeprotocols::rosetta_scripts::get_resnum_list (std::string const str, core::pose::Pose const &pose)
 returns a resnum list directly from a string
utility::vector1< Sizeprotocols::rosetta_scripts::get_resnum_list_ordered (std::string const str, core::pose::Pose const &pose)
 returns a resnum list directly from a string, preserving order
utility::vector1
< core::pack::task::operation::TaskOperationOP
protocols::rosetta_scripts::get_task_operations (utility::tag::TagPtr const tag, protocols::moves::DataMap const &data)
core::pack::task::TaskFactoryOP protocols::rosetta_scripts::parse_task_operations (utility::tag::TagPtr const tag, protocols::moves::DataMap const &data)
core::pack::task::TaskFactoryOP protocols::rosetta_scripts::parse_task_operations (utility::tag::TagPtr const tag, protocols::moves::DataMap &data, core::pack::task::TaskFactoryOP &task_factory)
 option to add or refer to a Taskfactory through the datamap, similar to how to add/refer to movemap OPs (EMS)
core::scoring::ScoreFunctionOP protocols::rosetta_scripts::parse_score_function (utility::tag::TagPtr const tag, protocols::moves::DataMap const &data, std::string const dflt_key)
core::pose::PoseOP protocols::rosetta_scripts::saved_reference_pose (utility::tag::TagPtr const in_tag, protocols::moves::DataMap &data_map)
 convenience function to access pointers to poses that will be stored in the data map at an arbitrary point during an RS protocol
void protocols::rosetta_scripts::parse_movemap (utility::tag::TagPtr const in_tag, core::pose::Pose const &pose, core::kinematics::MoveMapOP &mm, protocols::moves::DataMap &data, bool const reset_map)
 variant of parse_movemap that takes in a datamap and searches it for already existing movemaps
void protocols::rosetta_scripts::parse_movemap (utility::tag::TagPtr const in_tag, core::pose::Pose const &pose, core::kinematics::MoveMapOP mm)
protocols::filters::FilterOP protocols::rosetta_scripts::parse_filter (std::string const filter_name, protocols::filters::Filters_map const &filters)
protocols::moves::MoverOP protocols::rosetta_scripts::parse_mover (std::string const mover_name, protocols::moves::Movers_map const &movers)
numeric::xyzVector< core::Realprotocols::rosetta_scripts::parse_xyz_vector (utility::tag::TagPtr const xyz_vector_tag)
 utility function for parsing xyzVector
core::Size protocols::rosetta_scripts::find_nearest_res (core::pose::Pose const &source, core::pose::Pose const &target, core::Size const res)
 Return the number of the residue on source that is nearest to res on target. If the distance is greater than 2.0 returns 0 to indicate error.
utility::vector1< core::Sizeprotocols::rosetta_scripts::residue_packer_states (core::pose::Pose const &pose, core::pack::task::TaskFactoryCOP tf, bool const designable, bool const packable)
 returns a vector containing all the residues with a given packer state according to the TF
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