Rosetta 3.4
Classes | Namespaces
src/protocols/frag_picker/scores/TalosSSSimilarity.hh File Reference

scores a fragment by secondary structure similarity More...

#include <core/types.hh>
#include <protocols/frag_picker/FragmentPicker.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.hh>
#include <protocols/frag_picker/scores/CachingScoringMethod.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <utility/vector1.hh>

Classes

class  protocols::frag_picker::scores::TalosSSSimilarity
 scores a fragment by secondary structure similarity The score for each position is P(H), P(L) or P(E) if a vall residue is within Helix, Loop or Extended secondary stucture element, respectively. P(H), P(L) and P(E) denotes the probability that a given residue in a query is within Helix, Loop or Extended secondary stucture element. The total score of a fragment is a simple sum of all positions; for N-mer fragment is a sum of N terms
If P(H), P(L) and P(E) probabilities takes only 1.0 and 0.0 values, result of this scoring function should be the same as SecondaryIdentity, although the later one is faster. More...
class  protocols::frag_picker::scores::MakeTalosSSSimilarity
 Maker class that produces a new TalosSSSimilarity object. More...

Namespaces

namespace  protocols
 

The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.


namespace  protocols::frag_picker
namespace  protocols::frag_picker::scores

Detailed Description

scores a fragment by secondary structure similarity

Author:
rvernon@u.washington.edu
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