Rosetta 3.4
Namespaces | Classes | Typedefs | Enumerations | Functions | Variables
protocols::simple_moves Namespace Reference

Namespaces

namespace  asym_fold_and_dock
namespace  rational_mc
namespace  sidechain_moves
namespace  symmetry

Classes

class  AddCavitiesMover
class  AddConstraintsToCurrentConformationMover
class  AddConstraintsToCurrentConformationMoverCreator
class  BackboneMover
class  SmallMover
 A mover that makes independent random perturbations of the phi and psi torsion angles of residue i. It selects residue i at random among movable residues (set by its MoveMap), and the final torsion angle is subject to a metropolis criterion using the rama score to ensure that only favorable backbone torsion angles are being selected. The number of perturbations, and the magnitude of perturbations, and the temperature in the rama check, can all be modified. More...
class  ShearMover
 A mover that perturbs the phi of residue i and the psi of residue i-1 such that they create a 'shearing' effect, minimizing the downstream consequences of this torsional perturbation. The final torsion angle is subject to a metropolis criterion using the rama score to ensure that only favorable backbone torsion angles are being selected. The number of perturbations, and the magnitude of perturbations, and the temperature in the rama check, can all be modified. More...
class  SmallMoverCreator
class  ShearMoverCreator
class  BBConRotMover
class  BBGaussianMover
 the basic class for implementing Gaussian Perturbation of bb More...
class  BBG8T3AMover
 a particular gaussian mover from the original paper More...
class  ClearConstraintsMover
class  ClearConstraintsMoverCreator
class  ConsensusDesignMover
 This mover will modify a given task according to a sequence profile and then call the PackRotamersMover. At every position that is designable in the task, AAs that have a probability > min_aa_probability_ and higher than the native in the sequence profile will be allowed. More...
class  ConsensusDesignMoverCreator
class  ConstraintFragmentMover
class  ConstrainToIdealMover
class  ConstraintSetMover
class  ConstraintSetMoverCreator
class  ddG
class  ddGCreator
class  DesignRepackMover
 a pure virtual base class for movers which redesign and repack the interface More...
class  DME_FilterMover
class  DOFHistogramRecorder
class  ExtendedPoseMover
class  ExtendedPoseMoverCreator
class  FavorSequenceProfile
class  FavorSequenceProfileCreator
class  FragmentMover
 abstract base class for FragmentMovers More...
class  ClassicFragmentMover
 A FragmentMover that applies uniform sampling of fragments. More...
class  LoggedFragmentMover
class  GreedyOptMutationMover
class  GreedyOptMutationMoverCreator
class  MinimalRotamer
class  GroupDiscriminator
 Interface class used to break a pose down into a set of component "groups" where intra-group rotamer-pair energies are preserved between calls to the GreenPacker. E.g. in rigid-body docking between two proteins, chains 1 and 2 define groups 1 and 2. In rigid-body docking between two domains of the same chain, those residues upstream of jump 1 define group 1, and those downstream of jump 1 define group 2. In loop modelling, the static background is group 1, and the loop itself is group 0, since loop residues will have their bb dofs change regularly between repackings. More...
class  UserDefinedGroupDiscriminator
class  ChainGroupDiscriminator
class  GreenPacker
struct  GunnTuple
class  GunnCost
class  HelicalPeptideLengthMover
class  LoadUnboundRotMover
class  LoadUnboundRotMoverCreator
class  MakePolyXMover
class  MakePolyXMoverCreator
class  MembraneTopology
 A mover to change one torsion angle. More...
class  MembraneTopologyCreator
class  MinMover
 A protocols::moves::Mover that minimizes a Pose to a local energy minimum by performing energy minimization of a ScoreFunction over the allowable degrees of freedom, defined by a MoveMap. The minimization type, minimization tolerance, and various other options can be also be set. More...
class  MinMoverCreator
class  MinPackMover
 a mover that packs and minimizes the side-chains. It uses a ScoreFunction for packing and either a PackerTask, or a TaskFactory that generates a PackerTask for instructions on what rotamer sets are allowed at each residue position during packing. More...
class  MinPackMoverCreator
class  MissingDensityToJumpMover
class  MutateResidue
 A mover to mutate a single residue. More...
class  MutateResidueCreator
class  PackRotamersMover
 A protocols::moves::Mover that packs the side-chains using a rotamer library It uses a ScoreFunction for packing and a PackerTask, or a TaskFactory that generates a PackerTask, for instructions on what rotamer sets are allowed at each residue position during packing. More...
class  PackRotamersMoverCreator
class  PackRotamersMoverLazy
 a mover that packs the side-chains using a rotamer library in a lazy fashion. More...
class  PackRotamersMoverLazyCreator
class  PeptideStapleMover
class  ProlineFixMover
class  RepackSidechainsMover
 A protocols::moves::Mover that packs the side-chains (very similar to pack_missing_sidechains() More...
class  RepackSidechainsMoverCreator
class  RepulsiveOnlyMover
 this mover replace designated residues with glycines, and then assigns a "REPLONLY" residue type to those glycines. Those "REPLONLY" residues will make only repulsive contributions to the overall energy. More...
class  ReturnSidechainMover
class  RotamerTrialsMinMover
class  EnergyCutRotamerTrialsMinMover
 Wrapper for Rotamer Trials with Minimization, which modifies only rotamers whose energy changed by a given constant. More...
class  RotamerTrialsMinMoverCreator
class  RotamerTrialsMover
class  EnergyCutRotamerTrialsMover
class  RotamerTrialsMoverCreator
class  SaneMinMover
class  SaneMinMoverCreator
class  ScoreMover
class  ScoreMoverCreator
class  SequenceProfileMover
class  SequenceProfileMoverCreator
class  SetReturningPackRotamersMover
class  SetTorsion
 A mover to change one torsion angle. More...
class  SetTorsionCreator
class  ShakeStructureMover
class  FragmentCost
class  SmoothFragmentMover
class  SuperimposeMover
class  SwitchResidueTypeSetMover
 A mover that switches a pose between residue type sets (e.g. centroid and fullatom) More...
class  SwitchResidueTypeSetMoverCreator
class  SymmetricFragmentMover
 A SymmetricFragmentMover that applies uniform sampling of fragments. More...
class  SmoothSymmetricFragmentMover
 A SymmetricFragmentMover that applies uniform sampling of fragments. More...
class  TailsScoreMover
class  TaskAwareMinMover
class  TaskAwareMinMoverCreator
class  TorsionDOFMover
 TODO: De-duplicate shared code from RotateJumpAxisMover (angle picking code) More...
class  WobbleMover
 A protocols::moves::Mover class for a classic-wobble analog: a smooth move followed by ccd closure a smooth fragment is chosen according to the FragmentCost Functor; a cutpoint is inserted just in front of or just after the fragment a loop is defined around the fragment and cutpoint to be closed with ccd: a cut_Cterm insertion: ----lfff bbb---- f: fragment_res b: buffer_res -: immovable residues a !cut_Cterm insertion: ---bbb fffl--- the number of b resiudes is controlled by buffer_length_ (default 3); the move is used by apply() (inherited from FragmentMover). the insertion and loop closure is implemented in the virtual method apply_fragment(). More...

Typedefs

typedef
utility::pointer::owning_ptr
< BackboneMover
BackboneMoverOP
typedef
utility::pointer::owning_ptr
< BackboneMover const > 
BackboneMoverCOP
typedef
utility::pointer::owning_ptr
< SmallMover
SmallMoverOP
typedef
utility::pointer::owning_ptr
< SmallMover const > 
SmallMoverCOP
typedef
utility::pointer::owning_ptr
< ShearMover
ShearMoverOP
typedef
utility::pointer::owning_ptr
< ShearMover const > 
ShearMoverCOP
typedef
utility::pointer::owning_ptr
< BBConRotMover
BBConRotMoverOP
typedef
utility::pointer::owning_ptr
< BBConRotMover const > 
BBConRotMoverCOP
typedef
utility::pointer::owning_ptr
< BBGaussianMover
BBGaussianMoverOP
typedef
utility::pointer::owning_ptr
< BBGaussianMover const > 
BBGaussianMoverCOP
typedef
utility::pointer::owning_ptr
< BBG8T3AMover
BBG8T3AMoverOP
typedef
utility::pointer::owning_ptr
< BBG8T3AMover const > 
BBG8T3AMoverCOP
typedef
utility::pointer::owning_ptr
< ConsensusDesignMover
ConsensusDesignMoverOP
typedef utility::vector1
< core::Real
ScoreList
typedef
utility::pointer::owning_ptr
< ConstrainToIdealMover
ConstrainToIdealMoverOP
typedef
utility::pointer::owning_ptr
< ConstrainToIdealMover const > 
ConstrainToIdealMoverCOP
typedef
utility::pointer::owning_ptr
< ConstraintSetMover
ConstraintSetMoverOP
typedef
utility::pointer::owning_ptr
< ConstraintSetMover const > 
ConstraintSetMoverCOP
typedef
utility::pointer::owning_ptr
< ddG
ddGOP
typedef
utility::pointer::owning_ptr
< ddG const > 
ddGCOP
typedef
utility::pointer::owning_ptr
< DesignRepackMover
DesignRepackMoverOP
typedef
utility::pointer::owning_ptr
< DesignRepackMover const > 
DesignRepackMoverCOP
typedef
utility::pointer::owning_ptr
< ExtendedPoseMover
ExtendedPoseMoverOP
typedef
utility::pointer::owning_ptr
< ExtendedPoseMover const > 
ExtendedPoseMoverCOP
typedef
utility::pointer::owning_ptr
< FragmentMover
FragmentMoverOP
typedef
utility::pointer::owning_ptr
< FragmentMover const > 
FragmentMoverCOP
typedef
utility::pointer::owning_ptr
< ClassicFragmentMover
ClassicFragmentMoverOP
typedef
utility::pointer::owning_ptr
< ClassicFragmentMover const > 
ClassicFragmentMoverCOP
typedef
utility::pointer::owning_ptr
< GreedyOptMutationMover
GreedyOptMutationMoverOP
typedef
utility::pointer::owning_ptr
< GreedyOptMutationMover const > 
GreedyOptMutationMoverCOP
typedef
utility::pointer::owning_ptr
< MinimalRotamer
MinimalRotamerOP
typedef
utility::pointer::owning_ptr
< MinimalRotamer const > 
MinimalRotamerCOP
typedef
utility::pointer::owning_ptr
< GroupDiscriminator
GroupDiscriminatorOP
typedef
utility::pointer::owning_ptr
< GroupDiscriminator const > 
GroupDiscriminatorCOP
typedef
utility::pointer::owning_ptr
< UserDefinedGroupDiscriminator
UserDefinedGroupDiscriminatorOP
typedef
utility::pointer::owning_ptr
< GreenPacker
GreenPackerOP
typedef
utility::pointer::owning_ptr
< GreenPacker const > 
GreenPackerCOP
typedef
utility::pointer::owning_ptr
< HelicalPeptideLengthMover
HelicalPeptideLengthMoverOP
typedef
utility::pointer::owning_ptr
< HelicalPeptideLengthMover
const > 
HelicalPeptideLengthMoverCOP
typedef
utility::pointer::owning_ptr
< LoadUnboundRotMover
LoadUnboundRotMoverOP
typedef
utility::pointer::owning_ptr
< LoadUnboundRotMover const > 
LoadUnboundRotMoverCOP
typedef
utility::pointer::owning_ptr
< MakePolyXMover
MakePolyXMoverOP
typedef
utility::pointer::owning_ptr
< MembraneTopology
MembraneTopologyOP
typedef
utility::pointer::owning_ptr
< MembraneTopology const > 
MembraneTopologyCOP
typedef
utility::pointer::owning_ptr
< MinMover
MinMoverOP
typedef
utility::pointer::owning_ptr
< MinMover const > 
MinMoverCOP
typedef
utility::pointer::owning_ptr
< MinPackMover
MinPackMoverOP
typedef
utility::pointer::owning_ptr
< MinPackMover const > 
MinPackMoverCOP
typedef
utility::pointer::owning_ptr
< MissingDensityToJumpMover
MissingDensityToJumpMoverOP
typedef
utility::pointer::owning_ptr
< MissingDensityToJumpMover
const > 
MissingDensityToJumpMoverCOP
typedef
utility::pointer::owning_ptr
< MutateResidue
MutateResidueOP
typedef
utility::pointer::owning_ptr
< MutateResidue const > 
MutateResidueCOP
typedef
utility::pointer::owning_ptr
< PackRotamersMover
PackRotamersMoverOP
typedef
utility::pointer::owning_ptr
< PackRotamersMover const > 
PackRotamersMoverCOP
typedef
utility::pointer::owning_ptr
< PackRotamersMoverLazy
PackRotamersMoverLazyOP
typedef
utility::pointer::owning_ptr
< PackRotamersMoverLazy const > 
PackRotamersMoverLazyCOP
typedef
utility::pointer::owning_ptr
< PeptideStapleMover
PeptideStapleMoverOP
typedef
utility::pointer::owning_ptr
< PeptideStapleMover const > 
PeptideStapleMoverCOP
typedef
utility::pointer::owning_ptr
< ProlineFixMover
ProlineFixMoverOP
typedef
utility::pointer::owning_ptr
< ProlineFixMover const > 
ProlineFixMoverCOP
typedef
utility::pointer::owning_ptr
< RepackSidechainsMover
RepackSidechainsMoverOP
typedef
utility::pointer::owning_ptr
< RepackSidechainsMover const > 
RepackSidechainsMoverCOP
typedef
utility::pointer::owning_ptr
< RepulsiveOnlyMover
RepulsiveOnlyMoverOP
typedef
utility::pointer::owning_ptr
< RepulsiveOnlyMover const > 
RepulsiveOnlyMoverCOP
typedef
utility::pointer::owning_ptr
< ReturnSidechainMover
ReturnSidechainMoverOP
typedef
utility::pointer::owning_ptr
< ReturnSidechainMover const > 
ReturnSidechainMoverCOP
typedef
utility::pointer::owning_ptr
< RotamerTrialsMinMover
RotamerTrialsMinMoverOP
typedef
utility::pointer::owning_ptr
< RotamerTrialsMinMover const > 
RotamerTrialsMinMoverCOP
typedef
utility::pointer::owning_ptr
< EnergyCutRotamerTrialsMinMover
EnergyCutRotamerTrialsMinMoverOP
typedef
utility::pointer::owning_ptr
< EnergyCutRotamerTrialsMinMover
const > 
EnergyCutRotamerTrialsMinMoverCOP
typedef
utility::pointer::owning_ptr
< RotamerTrialsMover
RotamerTrialsMoverOP
typedef
utility::pointer::owning_ptr
< RotamerTrialsMover const > 
RotamerTrialsMoverCOP
typedef
utility::pointer::owning_ptr
< EnergyCutRotamerTrialsMover
EnergyCutRotamerTrialsMoverOP
typedef
utility::pointer::owning_ptr
< EnergyCutRotamerTrialsMover
const > 
EnergyCutRotamerTrialsMoverCOP
typedef
utility::pointer::owning_ptr
< SaneMinMover
SaneMinMoverOP
typedef
utility::pointer::owning_ptr
< SaneMinMover const > 
SaneMinMoverCOP
typedef
utility::pointer::owning_ptr
< ScoreMover
ScoreMoverOP
typedef
utility::pointer::owning_ptr
< ScoreMover const > 
ScoreMoverCOP
typedef
utility::pointer::owning_ptr
< SequenceProfileMover
SequenceProfileMoverOP
typedef
utility::pointer::owning_ptr
< SequenceProfileMover const > 
SequenceProfileMoverCOP
typedef
utility::pointer::owning_ptr
< SetReturningPackRotamersMover
SetReturningPackRotamersMoverOP
typedef
utility::pointer::owning_ptr
< SetReturningPackRotamersMover
const > 
SetReturningPackRotamersMoverCOP
typedef
utility::pointer::owning_ptr
< SetTorsion
SetTorsionOP
typedef
utility::pointer::owning_ptr
< SetTorsion const > 
SetTorsionCOP
typedef
utility::pointer::owning_ptr
< ShakeStructureMover
ShakeStructureMoverOP
typedef
utility::pointer::owning_ptr
< ShakeStructureMover const > 
ShakeStructureMoverCOP
typedef
utility::pointer::owning_ptr
< SmoothFragmentMover
SmoothFragmentMoverOP
typedef
utility::pointer::owning_ptr
< SmoothFragmentMover const > 
SmoothFragmentMoverCOP
typedef
utility::pointer::owning_ptr
< FragmentCost
FragmentCostOP
typedef
utility::pointer::owning_ptr
< FragmentCost const > 
FragmentCostCOP
typedef
utility::pointer::owning_ptr
< SuperimposeMover
SuperimposeMoverOP
typedef
utility::pointer::owning_ptr
< SuperimposeMover const > 
SuperimposeMoverCOP
typedef
utility::pointer::owning_ptr
< SwitchResidueTypeSetMover
SwitchResidueTypeSetMoverOP
typedef
utility::pointer::owning_ptr
< SwitchResidueTypeSetMover
const > 
SwitchResidueTypeSetMoverCOP
typedef
utility::pointer::owning_ptr
< SymmetricFragmentMover
SymmetricFragmentMoverOP
typedef
utility::pointer::owning_ptr
< SymmetricFragmentMover const > 
SymmetricFragmentMoverCOP
typedef
utility::pointer::owning_ptr
< TaskAwareMinMover
TaskAwareMinMoverOP
typedef
utility::pointer::owning_ptr
< TaskAwareMinMover const > 
TaskAwareMinMoverCOP
typedef
utility::pointer::owning_ptr
< TorsionDOFMover
TorsionDOFMoverOP
typedef
utility::pointer::owning_ptr
< TorsionDOFMover const > 
TorsionDOFMoverCOP
typedef
utility::pointer::owning_ptr
< WobbleMover
WobbleMoverOP
typedef
utility::pointer::owning_ptr
< const WobbleMover
WobbleMoverCOP

Enumerations

enum  residue_addition_type { append = 1, prepend, insert }

Functions

static
numeric::random::RandomGenerator 
RG (90)
void apply_ideal_coordinates_for_alternative_pucker (core::pose::Pose const &pose, core::pose::Pose &pose_reference)
static basic::Tracer TR ("protocols.protein_interface_design.movers.ddG")
conformation::PointGraphOP setup_dme_point_graph (pose::Pose const &ref_pose, Real const threshold)
Real point_graph_dme (conformation::PointGraph const &pg, pose::Pose const &pose)
std::ostream & operator<< (std::ostream &os, DOFHistogramRecorder const &dof_recorder)
utility::vector1< core::Realuniform_dof_distribution (core::id::DOF_Type dof_type, core::Size num_bins, core::Real min, core::Real max)
static basic::Tracer TR ("protocols.simple_moves.FavorSequenceProfile")
static
numeric::random::RandomGenerator 
RG (489)
static basic::Tracer tr ("protocols.simple_moves.FragmentMover")
static basic::Tracer TR ("protocols.simple_moves.GreedyOptMutationMover")
bool cmp_pair_by_second (std::pair< AA, Real > const pair1, std::pair< AA, Real > const pair2)
bool cmp_triple_by_third (std::pair< Size, std::pair< AA, Real > > const pair1, std::pair< Size, std::pair< AA, Real > > const pair2)
basic::Tracer TR ("protocols.simple_moves.GreenPacker")
static basic::Tracer trGunnCost ("protocols.FragmentMover.GunnCost")
static basic::Tracer TR ("protocols.simple_moves.MembraneTopology")
static basic::Tracer TR ("protocols.simple_moves.MinMover")
static basic::Tracer TR ("protocols.simple_moves.MinPackMover")
static basic::Tracer TR ("protocols.mover.MissingDensityToJumpMover")
static basic::Tracer TR ("protocols.simple_moves.MutateResidue")
static basic::Tracer TR ("protocols.simple_moves.PackRotamersMover")
static basic::Tracer TR ("protocols.simple_moves.PackRotamersMoverLazy")
static basic::Tracer TR ("protocols.simple_moves.RepackSidechainsMover")
static basic::Tracer TR ("protocol.mover.RepulsiveOnlyMover")
static basic::Tracer TR ("protocols.simple_moves.SaneMinMover")
static basic::Tracer TR ("protocols.simple_moves.ScoreMover")
static basic::Tracer TR ("protocols.simple_moves.SetTorsion")
static
numeric::random::RandomGenerator 
rg (15433)
static
numeric::random::RandomGenerator 
RG (345)
static basic::Tracer TR ("protocols.simple_moves.SuperimposeMover")
static
numeric::random::RandomGenerator 
RG (43389)
static
numeric::random::RandomGenerator 
RG (490)

Variables

const int VISITED = 1
const int PREVIOUS_HILL = 2
const int HILL = 3
const int VISITED_HILL = 4
const double ED = 2
const double KT = 15

Typedef Documentation


Enumeration Type Documentation

Enumerator:
append 
prepend 
insert 

Function Documentation

void protocols::simple_moves::apply_ideal_coordinates_for_alternative_pucker ( core::pose::Pose const &  pose,
core::pose::Pose pose_reference 
)
bool protocols::simple_moves::cmp_pair_by_second ( std::pair< AA, Real > const  pair1,
std::pair< AA, Real > const  pair2 
)
bool protocols::simple_moves::cmp_triple_by_third ( std::pair< Size, std::pair< AA, Real > > const  pair1,
std::pair< Size, std::pair< AA, Real > > const  pair2 
)
std::ostream & protocols::simple_moves::operator<< ( std::ostream &  os,
DOFHistogramRecorder const &  dof_recorder 
)
Real protocols::simple_moves::point_graph_dme ( conformation::PointGraph const &  pg,
pose::Pose const &  pose 
)
static numeric::random::RandomGenerator protocols::simple_moves::RG ( 489  ) [static]
static numeric::random::RandomGenerator protocols::simple_moves::RG ( 490  ) [static]
static numeric::random::RandomGenerator protocols::simple_moves::RG ( 90  ) [static]
static numeric::random::RandomGenerator protocols::simple_moves::rg ( 15433  ) [static]
static numeric::random::RandomGenerator protocols::simple_moves::RG ( 345  ) [static]
static numeric::random::RandomGenerator protocols::simple_moves::RG ( 43389  ) [static]
conformation::PointGraphOP protocols::simple_moves::setup_dme_point_graph ( pose::Pose const &  ref_pose,
Real const  threshold 
)
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.PackRotamersMover"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.MutateResidue"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.mover.MissingDensityToJumpMover"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.PackRotamersMoverLazy"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.ScoreMover"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.FavorSequenceProfile"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.SaneMinMover"  ) [static]
basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.GreenPacker"  )
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.MembraneTopology"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.protein_interface_design.movers.ddG"  ) [static]

Referenced by protocols::simple_moves::SuperimposeMover::apply(), protocols::simple_moves::sidechain_moves::SidechainMover::apply(), protocols::simple_moves::sidechain_moves::SidechainMCMover::apply(), protocols::simple_moves::SetTorsion::apply(), protocols::simple_moves::SetReturningPackRotamersMover::apply(), protocols::simple_moves::SequenceProfileMover::apply(), protocols::simple_moves::ScoreMover::apply(), protocols::simple_moves::SaneMinMover::apply(), protocols::simple_moves::RotamerTrialsMover::apply(), protocols::simple_moves::PeptideStapleMover::apply(), protocols::simple_moves::MutateResidue::apply(), protocols::simple_moves::MissingDensityToJumpMover::apply(), protocols::simple_moves::MakePolyXMover::apply(), protocols::simple_moves::HelicalPeptideLengthMover::apply(), protocols::simple_moves::GreenPacker::apply(), protocols::simple_moves::DME_FilterMover::apply(), protocols::simple_moves::ddG::apply(), protocols::simple_moves::BBConRotMover::apply(), protocols::simple_moves::AddConstraintsToCurrentConformationMover::apply(), protocols::simple_moves::ConsensusDesignMover::create_consensus_design_task(), protocols::simple_moves::sidechain_moves::SidechainMover::make_move(), protocols::simple_moves::BBConRotMover::make_move(), protocols::simple_moves::TaskAwareMinMover::parse_my_tag(), protocols::simple_moves::sidechain_moves::SidechainMCMover::parse_my_tag(), protocols::simple_moves::SetTorsion::parse_my_tag(), protocols::simple_moves::SequenceProfileMover::parse_my_tag(), protocols::simple_moves::RotamerTrialsMinMover::parse_my_tag(), protocols::simple_moves::PackRotamersMoverLazy::parse_my_tag(), protocols::simple_moves::MutateResidue::parse_my_tag(), protocols::simple_moves::MinPackMover::parse_my_tag(), protocols::simple_moves::MakePolyXMover::parse_my_tag(), protocols::simple_moves::FavorSequenceProfile::parse_my_tag(), protocols::simple_moves::DesignRepackMover::parse_my_tag(), protocols::simple_moves::ConstraintSetMover::parse_my_tag(), protocols::simple_moves::FavorSequenceProfile::set_profile(), and protocols::simple_moves::FavorSequenceProfile::set_sequence().

static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.GreedyOptMutationMover"  ) [static]
static basic::Tracer protocols::simple_moves::tr ( "protocols.simple_moves.FragmentMover"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.MinMover"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.MinPackMover"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocol.mover.RepulsiveOnlyMover"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.SuperimposeMover"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.SetTorsion"  ) [static]
static basic::Tracer protocols::simple_moves::TR ( "protocols.simple_moves.RepackSidechainsMover"  ) [static]
static basic::Tracer protocols::simple_moves::trGunnCost ( "protocols.FragmentMover.GunnCost"  ) [static]
utility::vector1< core::Real > protocols::simple_moves::uniform_dof_distribution ( core::id::DOF_Type  dof_type,
core::Size  num_bins,
core::Real  min,
core::Real  max 
)

Variable Documentation

const double protocols::simple_moves::ED = 2
const double protocols::simple_moves::KT = 15
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