Rosetta 3.4
Public Types | Public Member Functions
protocols::scoring::methods::InterchainPairEnergy Class Reference

#include <InterchainPairEnergy.hh>

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List of all members.

Public Types

typedef
core::scoring::methods::ContextIndependentTwoBodyEnergy 
parent

Public Member Functions

 InterchainPairEnergy ()
 c-tor
virtual
core::scoring::methods::EnergyMethodOP 
clone () const
 clone
virtual void setup_for_scoring (core::pose::Pose &pose, core::scoring::ScoreFunction const &) const
virtual void residue_pair_energy (core::conformation::Residue const &rsd1, core::conformation::Residue const &rsd2, core::pose::Pose const &, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &emap) const
 calculate the pair_score between chains
virtual void finalize_total_energy (core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &) const
 called by the ScoreFunction at the end of energy evaluation. The derived class has the opportunity to accumulate a score into the pose's total_energy EnergyMap. WholeStructure energies operate within this method; any method using a NeighborList during minimization would also operate within this function call.
virtual bool defines_intrares_energy (core::scoring::EnergyMap const &) const
 This method *should* admit to defining intraresidue energies.
void eval_intrares_energy (core::conformation::Residue const &, core::pose::Pose const &, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &) const
 Evaluate the intra-residue energy for a given residue.
virtual core::Distance atomic_interaction_cutoff () const
 Energy distance cutoff.
virtual void indicate_required_context_graphs (utility::vector1< bool > &) const
 Indicate in the context-graphs-required list which context-graphs this energy method requires that the Pose maintain when doing neighbor evaluation. Context graphs are allowed.

Member Typedef Documentation


Constructor & Destructor Documentation

protocols::scoring::methods::InterchainPairEnergy::InterchainPairEnergy ( )

c-tor

Referenced by clone().


Member Function Documentation

core::Distance protocols::scoring::methods::InterchainPairEnergy::atomic_interaction_cutoff ( ) const [virtual]

Energy distance cutoff.

Implements core::scoring::methods::ShortRangeTwoBodyEnergy.

core::scoring::methods::EnergyMethodOP protocols::scoring::methods::InterchainPairEnergy::clone ( ) const [virtual]
virtual bool protocols::scoring::methods::InterchainPairEnergy::defines_intrares_energy ( core::scoring::EnergyMap const &  ) const [inline, virtual]

This method *should* admit to defining intraresidue energies.

Implements core::scoring::methods::TwoBodyEnergy.

void protocols::scoring::methods::InterchainPairEnergy::eval_intrares_energy ( core::conformation::Residue const &  rsd,
core::pose::Pose const &  pose,
core::scoring::ScoreFunction const &  sfxn,
core::scoring::EnergyMap emap 
) const [inline, virtual]

Evaluate the intra-residue energy for a given residue.

Implements core::scoring::methods::TwoBodyEnergy.

void protocols::scoring::methods::InterchainPairEnergy::finalize_total_energy ( core::pose::Pose pose,
core::scoring::ScoreFunction const &  sfxn,
core::scoring::EnergyMap total_energy 
) const [virtual]

called by the ScoreFunction at the end of energy evaluation. The derived class has the opportunity to accumulate a score into the pose's total_energy EnergyMap. WholeStructure energies operate within this method; any method using a NeighborList during minimization would also operate within this function call.

called at the end of energy evaluation

Reimplemented from core::scoring::methods::EnergyMethod.

virtual void protocols::scoring::methods::InterchainPairEnergy::indicate_required_context_graphs ( utility::vector1< bool > &  context_graphs_required) const [inline, virtual]

Indicate in the context-graphs-required list which context-graphs this energy method requires that the Pose maintain when doing neighbor evaluation. Context graphs are allowed.

Implements core::scoring::methods::EnergyMethod.

void protocols::scoring::methods::InterchainPairEnergy::residue_pair_energy ( core::conformation::Residue const &  rsd1,
core::conformation::Residue const &  rsd2,
core::pose::Pose const &  pose,
core::scoring::ScoreFunction const &  ,
core::scoring::EnergyMap emap 
) const [virtual]

calculate the pair_score between chains

Implements core::scoring::methods::TwoBodyEnergy.

References core::scoring::interchain_pair, and core::scoring::interchain_vdw.

void protocols::scoring::methods::InterchainPairEnergy::setup_for_scoring ( core::pose::Pose pose,
core::scoring::ScoreFunction const &   
) const [virtual]

The documentation for this class was generated from the following files:
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