Rosetta 3.4
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src/protocols/abinitio/MembraneAbinitio.cc File Reference

ab-initio fragment assembly protocol for membrane proteins More...

#include <protocols/abinitio/MembraneAbinitio.hh>
#include <protocols/simple_moves/GunnCost.hh>
#include <core/pose/Pose.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/types.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/MembraneTopology.hh>
#include <core/scoring/MembranePotential.hh>
#include <core/scoring/MembranePotential.fwd.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/ProteinSilentStruct.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/moves/WhileMover.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <utility/vector1.fwd.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <numeric/numeric.functions.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/option_macros.hh>
#include <cstdlib>
#include <string>
#include <core/fragment/FragSet.hh>
#include <core/io/silent/ProteinSilentStruct.tmpl.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <numeric/random/random.fwd.hh>

Classes

class  protocols::abinitio::AllResiduesChanged
 (helper) functor class which keeps track of initial phi/psi values. calls of operator ( pose ) compare the initial phi/psi values More...

Namespaces

namespace  ObjexxFCL
 

A class for defining residue.


namespace  ObjexxFCL::fmt
namespace  protocols
 

The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.


namespace  protocols::abinitio

Functions

static basic::Tracer tr ("protocols.membrane.abinitio", basic::t_info)

Detailed Description

ab-initio fragment assembly protocol for membrane proteins

Detailed:
Contains currently: Membrane Abinitio
Author:
Bjorn Wallner (copied some time ago from ClassicAbinitio.cc of Oliver Lange )

Function Documentation

static basic::Tracer tr ( "protocols.membrane.abinitio"  ,
basic::t_info   
) [static]
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