Rosetta 3.4
core::scoring::constraints::NonResidueTypeConstraint Member List
This is the complete list of members for core::scoring::constraints::NonResidueTypeConstraint, including all inherited members.
atom(Size const index) const core::scoring::constraints::NonResidueTypeConstraint [inline, virtual]
AtomID typedefcore::scoring::constraints::Constraint
choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &)core::scoring::constraints::Constraint [inline, virtual]
clone() const core::scoring::constraints::NonResidueTypeConstraint [virtual]
core::scoring::constraints::Constraint::clone(FuncOP) const core::scoring::constraints::Constraint [inline, virtual]
Constraint(ScoreType const &t)core::scoring::constraints::Constraint [inline]
dist(core::pose::Pose const &) const core::scoring::constraints::Constraint [inline, virtual]
dist(XYZ_Func const &) const core::scoring::constraints::Constraint [inline, virtual]
effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const core::scoring::constraints::Constraint [inline, virtual]
fill_f1_f2(AtomID const &atom, XYZ_Func const &xyz, Vector &F1, Vector &F2, EnergyMap const &weights) const core::scoring::constraints::NonResidueTypeConstraint [virtual]
get_func() const core::scoring::constraints::Constraint [inline, virtual]
natoms() const core::scoring::constraints::NonResidueTypeConstraint [inline, virtual]
NonResidueTypeConstraint(pose::Pose const &pose, Size seqpos, Real non_native_residue_bonus)core::scoring::constraints::NonResidueTypeConstraint
NonResidueTypeConstraint(pose::Pose const &pose, Size seqpos, std::string AAname, Real favor_non_native_bonus)core::scoring::constraints::NonResidueTypeConstraint
NonResidueTypeConstraint(Size seqpos, std::string aa_in, std::string name3_in, core::Real bonus_in)core::scoring::constraints::NonResidueTypeConstraint
operator!=(Constraint const &other) const core::scoring::constraints::Constraint [inline]
operator==(Constraint const &) const core::scoring::constraints::Constraint [inline, virtual]
read_constraint(std::istream &, core::pose::Pose const &)core::scoring::constraints::Constraint [inline, virtual]
read_data(std::istream &)core::scoring::constraints::Constraint [inline, virtual]
read_def(std::istream &, pose::Pose const &, FuncFactory const &)core::scoring::constraints::Constraint [inline, virtual]
Real typedefcore::scoring::constraints::NonResidueTypeConstraint
remap_resid(core::id::SequenceMapping const &seqmap) const core::scoring::constraints::NonResidueTypeConstraint [virtual]
remapped_clone(pose::Pose const &, pose::Pose const &, id::SequenceMappingCOP map=NULL) const core::scoring::constraints::Constraint [inline, virtual]
residues() const core::scoring::constraints::NonResidueTypeConstraint [virtual]
score(XYZ_Func const &xyz_func, EnergyMap const &weights, EnergyMap &emap) const core::scoring::constraints::NonResidueTypeConstraint [virtual]
core::scoring::constraints::Constraint::score(conformation::Conformation const &) const core::scoring::constraints::Constraint [inline, virtual]
score_type() const core::scoring::constraints::Constraint [inline]
setup_for_derivatives(XYZ_Func const &, ScoreFunction const &) const core::scoring::constraints::Constraint [inline, virtual]
setup_for_scoring(XYZ_Func const &, ScoreFunction const &) const core::scoring::constraints::Constraint [inline, virtual]
show(std::ostream &out) const core::scoring::constraints::NonResidueTypeConstraint [virtual]
show_def(std::ostream &, pose::Pose const &) const core::scoring::constraints::Constraint [inline, virtual]
show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const core::scoring::constraints::Constraint [inline, virtual]
steal_def(pose::Pose const &)core::scoring::constraints::Constraint [inline, virtual]
to_string() const core::scoring::constraints::Constraint [inline]
type() const core::scoring::constraints::Constraint [inline, virtual]
~Constraint()core::scoring::constraints::Constraint [inline, virtual]
~NonResidueTypeConstraint()core::scoring::constraints::NonResidueTypeConstraint [virtual]
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