Rosetta 3.4
Public Member Functions
protocols::jd2::AtomTreeDiffJobOutputter Class Reference

#include <AtomTreeDiffJobOutputter.hh>

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List of all members.

Public Member Functions

 AtomTreeDiffJobOutputter ()
 ~AtomTreeDiffJobOutputter ()
void final_pose (JobCOP job, core::pose::Pose const &pose)
 this function outputs the final result of a job.
void other_pose (JobCOP job, core::pose::Pose const &pose, std::string const &tag, int copy_count=-1, bool score_only=false)
 this function is intended for saving mid-protocol poses; for example the final centroid structure in a combined centroid/fullatom protocol.
bool job_has_completed (JobCOP job)
 this function is not used for output, but it belongs here since it needs to check the same output locations as the class normally writes to. This class checks wherever output goes to see if the job's expected output already exists (on disk or whatever). This is the most basic form of checkpointing. The base implementation looks for a pdb with the job's name already in existence.
std::string output_name (JobCOP job)
 this is the master function for determining the unique output identifier for a job
void set_precision (int bb_precision, int sc_precision, int bondlen_precision)
 what precision should the atom_tree_diff be ouput at?
void use_input_for_ref (bool use_input=true)
 use input as reference pose?

Detailed Description

this is a middle-layer implementation of JobOutputter for file-based output. It handles scorefile output, as scorefiles are common to file-outputting methods.


Constructor & Destructor Documentation

protocols::jd2::AtomTreeDiffJobOutputter::AtomTreeDiffJobOutputter ( )

References set_precision().

protocols::jd2::AtomTreeDiffJobOutputter::~AtomTreeDiffJobOutputter ( )

Member Function Documentation

void protocols::jd2::AtomTreeDiffJobOutputter::final_pose ( JobCOP  job,
core::pose::Pose const &  pose 
) [virtual]

this function outputs the final result of a job.

Implements protocols::jd2::FileJobOutputter.

References core::sequence::end, and output_name().

bool protocols::jd2::AtomTreeDiffJobOutputter::job_has_completed ( JobCOP  job) [virtual]

this function is not used for output, but it belongs here since it needs to check the same output locations as the class normally writes to. This class checks wherever output goes to see if the job's expected output already exists (on disk or whatever). This is the most basic form of checkpointing. The base implementation looks for a pdb with the job's name already in existence.

Implements protocols::jd2::FileJobOutputter.

References output_name().

void protocols::jd2::AtomTreeDiffJobOutputter::other_pose ( JobCOP  job,
core::pose::Pose const &  pose,
std::string const &  tag,
int  copy_count = -1,
bool  score_only = false 
) [virtual]

this function is intended for saving mid-protocol poses; for example the final centroid structure in a combined centroid/fullatom protocol.

Implements protocols::jd2::FileJobOutputter.

std::string protocols::jd2::AtomTreeDiffJobOutputter::output_name ( JobCOP  job) [virtual]

this is the master function for determining the unique output identifier for a job

Implements protocols::jd2::FileJobOutputter.

References protocols::jd2::JobOutputter::affixed_numbered_name().

Referenced by final_pose(), and job_has_completed().

void protocols::jd2::AtomTreeDiffJobOutputter::set_precision ( int  bb_precision,
int  sc_precision,
int  bondlen_precision 
)

what precision should the atom_tree_diff be ouput at?

Referenced by AtomTreeDiffJobOutputter().

void protocols::jd2::AtomTreeDiffJobOutputter::use_input_for_ref ( bool  use_input = true)

use input as reference pose?


The documentation for this class was generated from the following files:
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