Rosetta 3.4
Public Member Functions
protocols::jumping::ResiduePairJump Class Reference

#include <ResiduePairJump.hh>

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List of all members.

Public Member Functions

 ResiduePairJump ()
 ~ResiduePairJump ()
 ResiduePairJump (core::chemical::ResidueType const &residue1, core::chemical::ResidueType const &residue2)
void add_residue_pair (core::chemical::ResidueType const &residue1, core::chemical::ResidueType const &residue2)
void add_residue_single (core::chemical::ResidueType const &residue)
bool jumpAtoms_defined () const
bool cstAtoms_defined () const
bool cstInfoMap_defined () const
void set_cstAtoms (core::Size rsd, core::Size atom, std::string name)
utility::vector1< std::string >
const & 
cstAtoms (core::Size i) const
void set_jumpAtoms (core::Size rsd, core::Size atom, std::string name)
utility::vector1< std::string >
const & 
jumpAtoms (core::Size i) const
void set_cstInfo (cstType type, core::Real value)
void set_cstInfo (cstType type, utility::vector1< core::Real > const &values)
core::fragment::FrameOP generate_frame ()
void init_mini_pose ()
void diversify_dof_conformers (dofType type, core::Size max_index)
void diversify_dof_conformers ()
core::pose::PoseOP apply_dof_conformer (std::map< dofType, core::Size > const &conformer_map)
void build_sidechain_rotamers ()
void build_cst_conformer_jumps ()
void diversify_cst_conformers (cstType type, core::Size max_index)
void diversify_cst_conformers ()

Constructor & Destructor Documentation

protocols::jumping::ResiduePairJump::ResiduePairJump ( )
protocols::jumping::ResiduePairJump::~ResiduePairJump ( )
protocols::jumping::ResiduePairJump::ResiduePairJump ( core::chemical::ResidueType const &  residue1,
core::chemical::ResidueType const &  residue2 
)

Member Function Documentation

void protocols::jumping::ResiduePairJump::add_residue_pair ( core::chemical::ResidueType const &  residue1,
core::chemical::ResidueType const &  residue2 
)
void protocols::jumping::ResiduePairJump::add_residue_single ( core::chemical::ResidueType const &  residue)
core::pose::PoseOP protocols::jumping::ResiduePairJump::apply_dof_conformer ( std::map< dofType, core::Size > const &  conformer_map)
void protocols::jumping::ResiduePairJump::build_cst_conformer_jumps ( )
void protocols::jumping::ResiduePairJump::build_sidechain_rotamers ( )
utility::vector1< std::string > const& protocols::jumping::ResiduePairJump::cstAtoms ( core::Size  i) const [inline]

Referenced by init_mini_pose().

bool protocols::jumping::ResiduePairJump::cstAtoms_defined ( ) const [inline]

Referenced by init_mini_pose().

bool protocols::jumping::ResiduePairJump::cstInfoMap_defined ( ) const [inline]
void protocols::jumping::ResiduePairJump::diversify_cst_conformers ( cstType  type,
core::Size  max_index 
)
void protocols::jumping::ResiduePairJump::diversify_cst_conformers ( )
void protocols::jumping::ResiduePairJump::diversify_dof_conformers ( dofType  type,
core::Size  max_index 
)
void protocols::jumping::ResiduePairJump::diversify_dof_conformers ( )
core::fragment::FrameOP protocols::jumping::ResiduePairJump::generate_frame ( )
void protocols::jumping::ResiduePairJump::init_mini_pose ( )
utility::vector1< std::string > const& protocols::jumping::ResiduePairJump::jumpAtoms ( core::Size  i) const [inline]
bool protocols::jumping::ResiduePairJump::jumpAtoms_defined ( ) const [inline]
void protocols::jumping::ResiduePairJump::set_cstAtoms ( core::Size  rsd,
core::Size  atom,
std::string  name 
) [inline]
void protocols::jumping::ResiduePairJump::set_cstInfo ( cstType  type,
utility::vector1< core::Real > const &  values 
)

add a vector of values to cstInfo type

References set_cstInfo().

void protocols::jumping::ResiduePairJump::set_cstInfo ( cstType  type,
core::Real  value 
)

add a value to cst type

Referenced by set_cstInfo().

void protocols::jumping::ResiduePairJump::set_jumpAtoms ( core::Size  rsd,
core::Size  atom,
std::string  name 
) [inline]

The documentation for this class was generated from the following files:
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