Rosetta 3.4
Public Member Functions
protocols::jumping::PairingLibrary Class Reference

#include <PairingLibrary.hh>

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List of all members.

Public Member Functions

 PairingLibrary ()
void read_from_file (std::string const &fn)
void read_from_file_no_filters (std::string const &fn)
core::kinematics::RT get_random_beta_sheet_jump (int const orientation, int const pleating) const
 classic rosetta++ accessor
core::kinematics::RT get_random_tmh_jump (int const orientation, int const pos1, int const pos2) const
 classic rosetta++ accessor
void set_tmh_jump (core::pose::Pose pose, int const jump_number, int const orientation, int const pos1, int const pos2) const
void create_jump_fragments (int const orientation, int const pleating, bool bWithTorsion, core::fragment::FragDataList &) const
 puts all jump-geometries that fit the orientation and pleating into list of FragData's. Try to reuse these FragData for different Frames that have same orientation and pleating This creates Fragments with single JumpSRFD --- PairingLibrary also stores phi/psi/omega of start and end residue use bWithTorsion = true to get FragData with BBTorsionSRFD and JumpSRFD length of single FragData is noTorsion 1 withTorsion 3 bWithTorsion = true length of single FragData is 3 start jump end
core::Size size () const
void generate_jump_frags (core::scoring::dssp::PairingsList const &pairings, core::kinematics::MoveMap const &mm, bool bWithTorsion, core::fragment::FragSet &frags_accumulator)

Constructor & Destructor Documentation

protocols::jumping::PairingLibrary::PairingLibrary ( ) [inline]

Member Function Documentation

void protocols::jumping::PairingLibrary::create_jump_fragments ( int const  orientation,
int const  pleating,
bool  bWithTorsion,
core::fragment::FragDataList frags 
) const [virtual]

puts all jump-geometries that fit the orientation and pleating into list of FragData's. Try to reuse these FragData for different Frames that have same orientation and pleating This creates Fragments with single JumpSRFD --- PairingLibrary also stores phi/psi/omega of start and end residue use bWithTorsion = true to get FragData with BBTorsionSRFD and JumpSRFD length of single FragData is noTorsion 1 withTorsion 3 bWithTorsion = true length of single FragData is 3 start jump end

puts all jump-geometries that fit the orientation and pleating into list of FragData's. Try to reuse these FragData for different Frames that have same orientation and pleating

Implements protocols::jumping::BasePairingLibrary.

Referenced by generate_jump_frags(), and protocols::jumping::JumpSample::generate_jump_frags().

void protocols::jumping::PairingLibrary::generate_jump_frags ( core::scoring::dssp::PairingsList const &  pairings,
core::kinematics::MoveMap const &  mm,
bool  bWithTorsion,
core::fragment::FragSet frags_accumulator 
) [virtual]
kinematics::RT protocols::jumping::PairingLibrary::get_random_beta_sheet_jump ( int const  orientation,
int const  pleating 
) const
kinematics::RT protocols::jumping::PairingLibrary::get_random_tmh_jump ( int const  orientation,
int const  pos1,
int const  pos2 
) const
void protocols::jumping::PairingLibrary::read_from_file ( std::string const &  fn)
void protocols::jumping::PairingLibrary::read_from_file_no_filters ( std::string const &  fn)
void protocols::jumping::PairingLibrary::set_tmh_jump ( core::pose::Pose  pose,
int const  jump_number,
int const  orientation,
int const  pos1,
int const  pos2 
) const
core::Size protocols::jumping::PairingLibrary::size ( ) const [inline]

The documentation for this class was generated from the following files:
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