Rosetta 3.4
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#include <SetSecStructEnergies.hh>
typedef protocols::jd2::parser::BluePrint protocols::fldsgn::potentials::SetSecStructEnergies::BluePrint |
typedef protocols::jd2::parser::BluePrintOP protocols::fldsgn::potentials::SetSecStructEnergies::BluePrintOP |
typedef protocols::filters::Filters_map protocols::fldsgn::potentials::SetSecStructEnergies::Filters_map |
Reimplemented from protocols::moves::Mover.
typedef protocols::moves::Movers_map protocols::fldsgn::potentials::SetSecStructEnergies::Movers_map |
typedef protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential protocols::fldsgn::potentials::SetSecStructEnergies::NatbiasHelicesSheetPotential |
typedef protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotentialOP protocols::fldsgn::potentials::SetSecStructEnergies::NatbiasHelicesSheetPotentialOP |
typedef protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential protocols::fldsgn::potentials::SetSecStructEnergies::NatbiasHelixPairPotential |
typedef protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotentialOP protocols::fldsgn::potentials::SetSecStructEnergies::NatbiasHelixPairPotentialOP |
Reimplemented from protocols::moves::Mover.
typedef core::scoring::ScoreFunction protocols::fldsgn::potentials::SetSecStructEnergies::ScoreFunction |
typedef core::scoring::ScoreFunctionOP protocols::fldsgn::potentials::SetSecStructEnergies::ScoreFunctionOP |
typedef std::string protocols::fldsgn::potentials::SetSecStructEnergies::String |
typedef core::conformation::symmetry::SymmetryInfoOP protocols::fldsgn::potentials::SetSecStructEnergies::SymmetryInfoOP |
typedef utility::tag::TagPtr protocols::fldsgn::potentials::SetSecStructEnergies::TagPtr |
Reimplemented from protocols::moves::Mover.
protocols::fldsgn::potentials::SetSecStructEnergies::SetSecStructEnergies | ( | ) |
default constructor
Referenced by clone(), and fresh_instance().
protocols::fldsgn::potentials::SetSecStructEnergies::SetSecStructEnergies | ( | ScoreFunctionOP const | sfx, |
String const & | filename, | ||
bool const | ss_from_blueprint = true |
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) |
value constructor
References set_blueprint().
protocols::fldsgn::potentials::SetSecStructEnergies::SetSecStructEnergies | ( | ScoreFunctionOP const | sfx, |
BluePrintOP const | blueprintOP, | ||
bool const | ss_from_blueprint = true |
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) |
value constructor
protocols::fldsgn::potentials::SetSecStructEnergies::SetSecStructEnergies | ( | SetSecStructEnergies const & | rval | ) |
copy constructor
copy constructor
protocols::fldsgn::potentials::SetSecStructEnergies::~SetSecStructEnergies | ( | ) | [virtual] |
default destructor
void protocols::fldsgn::potentials::SetSecStructEnergies::apply | ( | Pose & | pose | ) | [virtual] |
apply defined moves to given Pose
Implements protocols::moves::Mover.
References core::pose::Pose::conformation(), core::scoring::hs_pair, core::conformation::symmetry::is_symmetric(), core::scoring::natbias_hh, core::scoring::natbias_hs, core::scoring::natbias_ss, core::scoring::natbias_stwist, core::scoring::rsigma, core::scoring::SCORE12_PATCH, core::scoring::ss_pair, core::scoring::STANDARD_WTS, and protocols::fldsgn::potentials::TR().
SetSecStructEnergies::MoverOP protocols::fldsgn::potentials::SetSecStructEnergies::clone | ( | ) | const [virtual] |
SetSecStructEnergies::MoverOP protocols::fldsgn::potentials::SetSecStructEnergies::fresh_instance | ( | ) | const [virtual] |
create this type of object
Reimplemented from protocols::moves::Mover.
References SetSecStructEnergies().
std::string protocols::fldsgn::potentials::SetSecStructEnergies::get_name | ( | ) | const [virtual] |
Each derived class must specify its name. The class name.
Implements protocols::moves::Mover.
References protocols::fldsgn::potentials::SetSecStructEnergiesCreator::mover_name().
void protocols::fldsgn::potentials::SetSecStructEnergies::parse_my_tag | ( | TagPtr const | tag, |
DataMap & | data, | ||
Filters_map const & | , | ||
Movers_map const & | , | ||
Pose const & | |||
) | [virtual] |
parse xml file
parse xml
Reimplemented from protocols::moves::Mover.
References protocols::moves::DataMap::get(), set_blueprint(), ss_from_blueprint(), and protocols::fldsgn::potentials::TR().
void protocols::fldsgn::potentials::SetSecStructEnergies::scorefunction | ( | ScoreFunctionOP | sfx | ) |
set the centroid level score function
void protocols::fldsgn::potentials::SetSecStructEnergies::scorefunction | ( | ScoreFunction const & | sfx | ) |
set the centroid level score function
References core::scoring::ScoreFunction::clone().
void protocols::fldsgn::potentials::SetSecStructEnergies::set_blueprint | ( | BluePrintOP const | blp | ) |
set blueprint file
use blueprint
void protocols::fldsgn::potentials::SetSecStructEnergies::set_blueprint | ( | String const & | filename | ) |
set blueprint file by filename
use blueprint
Referenced by parse_my_tag(), and SetSecStructEnergies().
void protocols::fldsgn::potentials::SetSecStructEnergies::ss_from_blueprint | ( | bool const | flag | ) | [inline] |
define secondary structrue by blueprint
Referenced by parse_my_tag().