Rosetta 3.4
Public Member Functions
protocols::frag_picker::scores::GunnCostScore Class Reference

scores a fragment by its crmsd to the given reference structure More...

#include <GunnCostScore.hh>

Inheritance diagram for protocols::frag_picker::scores::GunnCostScore:
Inheritance graph
Collaboration diagram for protocols::frag_picker::scores::GunnCostScore:
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List of all members.

Public Member Functions

 GunnCostScore (Size, Real, bool, core::pose::PoseOP, utility::vector1< Size >, Size)
 creates a crmsd-based scoring function.
 ~GunnCostScore ()
void do_caching (VallChunkOP)
void clean_up ()
bool score (FragmentCandidateOP, FragmentScoreMapOP)
bool cached_score (FragmentCandidateOP, FragmentScoreMapOP)
void computeGunnTuples (core::pose::Pose &, Size, utility::vector1< GunnTuple > &)

Detailed Description

scores a fragment by its crmsd to the given reference structure

Constructor & Destructor Documentation

protocols::frag_picker::scores::GunnCostScore::GunnCostScore ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
core::pose::PoseOP  reference_pose,
utility::vector1< Size frag_sizes,
Size  max_chunk_size 

creates a crmsd-based scoring function.

Detailed: fragments will be compared to a given pose, which should have the same number of residues a the query sequence

References computeGunnTuples(), and protocols::frag_picker::scores::trGunnScore().

protocols::frag_picker::scores::GunnCostScore::~GunnCostScore ( )

Member Function Documentation

bool protocols::frag_picker::scores::GunnCostScore::cached_score ( FragmentCandidateOP  fragment,
FragmentScoreMapOP  scores 
) [virtual]
void protocols::frag_picker::scores::GunnCostScore::clean_up ( ) [virtual]
void protocols::frag_picker::scores::GunnCostScore::computeGunnTuples ( core::pose::Pose pose,
Size  frag_size,
utility::vector1< GunnTuple > &  result 
void protocols::frag_picker::scores::GunnCostScore::do_caching ( VallChunkOP  current_chunk) [virtual]
bool protocols::frag_picker::scores::GunnCostScore::score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]

The documentation for this class was generated from the following files:
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