Rosetta 3.4
protocols::enzdes::EnzdesFixBBProtocol Member List
This is the complete list of members for protocols::enzdes::EnzdesFixBBProtocol, including all inherited members.
add_pregenerated_enzdes_constraints(core::pose::Pose &pose) const protocols::enzdes::EnzdesBaseProtocol
apply(core::pose::Pose &pose)protocols::enzdes::EnzdesFixBBProtocol [virtual]
bb_interface_cutoff_protocols::ligand_docking::LigandBaseProtocol [protected]
catalytic_res(core::pose::Pose const &pose) const protocols::enzdes::EnzdesBaseProtocol
choose_desired_centroid(core::pose::Pose const &pose, core::Size jump_id, utility::vector1< core::Vector >)protocols::ligand_docking::LigandBaseProtocol [protected]
clear_info()protocols::moves::Mover [inline, virtual]
clone() const protocols::moves::Mover [virtual]
create_enzdes_movemap(core::pose::Pose &pose, core::pack::task::PackerTaskCOP task, bool min_all_jumps=false) const protocols::enzdes::EnzdesBaseProtocol
create_enzdes_pack_task(core::pose::Pose &pose, bool design=true)protocols::enzdes::EnzdesBaseProtocol
cst_minimize(core::pose::Pose &pose, core::pack::task::PackerTaskCOP task, bool cst_opt=false) const protocols::enzdes::EnzdesBaseProtocol
design_targets(core::pose::Pose const &pose) const protocols::enzdes::EnzdesBaseProtocol
design_targets_protocols::enzdes::EnzdesBaseProtocol [mutable, protected]
design_targets_score(core::pose::Pose const &pose) const protocols::enzdes::EnzdesBaseProtocol
disable_constraint_scoreterms()protocols::enzdes::EnzdesBaseProtocol [protected]
enable_constraint_scoreterms()protocols::enzdes::EnzdesBaseProtocol [protected]
enzdes_pack(core::pose::Pose &pose, core::pack::task::PackerTaskCOP, core::scoring::ScoreFunctionCOP scorefxn, core::Size cycles, bool minimize_after_packing, bool pack_unconstrained, bool favor_native) const protocols::enzdes::EnzdesBaseProtocol
EnzdesBaseProtocol()protocols::enzdes::EnzdesBaseProtocol
EnzdesFixBBProtocol()protocols::enzdes::EnzdesFixBBProtocol
exchange_ligands_in_pose(core::pose::Pose &pose, bool check_bb_clashes, core::scoring::ScoreFunctionCOP scofx)protocols::enzdes::EnzdesBaseProtocol [protected]
Filters_map typedefprotocols::moves::Mover
find_interface_backbone(core::pose::Pose const &pose, int jump_id, core::Real cutoff_dist, utility::vector1< bool > &is_interface, utility::vector1< bool > &is_around_interface) const protocols::ligand_docking::LigandBaseProtocol [protected]
find_interface_rsds(core::pose::Pose const &pose, int jump_id, core::Real padding, ObjexxFCL::FArray1D_bool &is_interface) const protocols::ligand_docking::LigandBaseProtocol [protected]
fresh_instance() const protocols::moves::Mover [virtual]
generate_explicit_ligand_rotamer_poses(core::pose::Pose const &orig_pose, utility::vector1< core::pose::PoseOP > &ligrot_poses, core::scoring::ScoreFunctionCOP scofx)protocols::enzdes::EnzdesBaseProtocol
get_additional_output()protocols::moves::Mover [virtual]
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Mover [inline]
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_ligand_id(core::pose::Pose const &pose) const protocols::ligand_docking::LigandBaseProtocol
get_ligand_id(core::pose::Pose const &pose, core::Size jump_id) const protocols::ligand_docking::LigandBaseProtocol
get_ligand_jump_id(core::pose::Pose const &pose) const protocols::ligand_docking::LigandBaseProtocol
get_name() const protocols::enzdes::EnzdesFixBBProtocol [virtual]
get_native_pose() const protocols::moves::Mover
get_non_bb_clashing_rotamers(core::pose::Pose const &pose, core::Size seqpos, core::scoring::ScoreFunctionCOP scofx, utility::vector1< core::conformation::ResidueCOP > &accepted_rotamers) const protocols::ligand_docking::LigandBaseProtocol
get_scorefxn()protocols::ligand_docking::LigandBaseProtocol
get_scorefxn() const protocols::ligand_docking::LigandBaseProtocol
get_type() const protocols::moves::Mover [inline]
hard_scorefxn_protocols::ligand_docking::LigandBaseProtocol [protected]
include_all_design_targets_in_design_interface_protocols::enzdes::EnzdesBaseProtocol [protected]
info()protocols::moves::Mover [inline, virtual]
info() const protocols::moves::Mover [inline, virtual]
is_catalytic_position(core::pose::Pose const &pose, core::Size const seqpos) const protocols::enzdes::EnzdesBaseProtocol
last_proposal_density_ratio()protocols::moves::Mover [inline, virtual]
LigandBaseProtocol()protocols::ligand_docking::LigandBaseProtocol
make_movemap(core::pose::Pose const &pose, core::Size jump_id, core::Real sc_padding, bool include_all_rsds, bool include_backbone, bool include_ligands, bool include_water) const protocols::ligand_docking::LigandBaseProtocol [protected]
make_packer_task(core::pose::Pose const &pose, ObjexxFCL::FArray1D_bool const &allow_repack, bool ligand_protonation) const protocols::ligand_docking::LigandBaseProtocol [protected]
make_packer_task(core::pose::Pose const &pose, int jump_id, core::Real sc_padding, bool include_all_rsds, bool ligand_protonation) const protocols::ligand_docking::LigandBaseProtocol [protected]
make_packer_task_ligand_only(core::pose::Pose const &pose, int jump_id, bool ligand_protonation) const protocols::ligand_docking::LigandBaseProtocol [protected]
make_tweaked_scorefxn(std::string const &weights_tag, bool estat_exclude_protein, bool estat_upweight, bool hbonds_downweight)protocols::ligand_docking::LigandBaseProtocol [protected]
move_ligand_to_desired_centroid(core::pose::Pose &pose, core::Size jump_id, utility::vector1< core::Vector > start_from_pts)protocols::ligand_docking::LigandBaseProtocol [protected]
move_ligand_to_desired_centroid(core::pose::Pose &pose, core::Size jump_id, core::Vector desired_centroid)protocols::ligand_docking::LigandBaseProtocol [protected]
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
operator=(Mover const &other)protocols::moves::Mover
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Mover [virtual]
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
reduced_scorefxn() const protocols::enzdes::EnzdesBaseProtocol
reduced_scorefxn()protocols::enzdes::EnzdesBaseProtocol
reduced_sfxn_protocols::enzdes::EnzdesBaseProtocol [protected]
register_options()protocols::enzdes::EnzdesFixBBProtocol [static]
reinitialize_for_each_job() const protocols::moves::Mover [virtual]
reinitialize_for_new_input() const protocols::moves::Mover [virtual]
remap_resid(core::pose::Pose const &pose, core::id::SequenceMapping const &smap)protocols::enzdes::EnzdesBaseProtocol [virtual]
remove_enzdes_constraints(core::pose::Pose &pose, bool keep_covalent) const protocols::enzdes::EnzdesBaseProtocol
reorder_foldtree_around_mobile_regions(core::pose::Pose &pose, core::Size const &jump_id, utility::vector1< bool > const &mobile_bb, core::Size const &lig_id) const protocols::ligand_docking::LigandBaseProtocol
reset_status()protocols::moves::Mover
restrain_ligand_nbr_atom(core::pose::Pose &pose, core::Size lig_id, core::Real stddev_Angstroms) const protocols::ligand_docking::LigandBaseProtocol [protected]
restrain_protein_Calphas(core::pose::Pose &pose, utility::vector1< bool > const &is_restrained, core::scoring::constraints::FuncOP restr_func) const protocols::ligand_docking::LigandBaseProtocol
restype_set() const protocols::enzdes::EnzdesBaseProtocol [inline]
sc_interface_padding_protocols::ligand_docking::LigandBaseProtocol [protected]
scorefxn_protocols::ligand_docking::LigandBaseProtocol [protected]
set_all_jumps_minimizable(bool const &setting)protocols::enzdes::EnzdesBaseProtocol [inline]
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Mover [inline]
set_fix_cataa(bool const &setting)protocols::enzdes::EnzdesBaseProtocol [inline]
set_input_pose(PoseCOP pose)protocols::moves::Mover [virtual]
set_last_move_status(MoverStatus status)protocols::moves::Mover [protected]
set_minimize_options(bool const &min_sc, bool const &min_bb, bool const &min_rb, bool const &min_lig, bool backrub=false)protocols::enzdes::EnzdesBaseProtocol [inline]
set_native_pose(PoseCOP pose)protocols::moves::Mover [virtual]
set_scorefxn(core::scoring::ScoreFunctionCOP scorefxn)protocols::enzdes::EnzdesBaseProtocol
setup_bbmin_foldtree(core::pose::Pose &pose, core::Size const &jump_id, core::Real cutoff_dist, core::Real stddev_Angstroms)protocols::ligand_docking::LigandBaseProtocol [protected]
setup_bbmin_ft_and_csts(core::pose::Pose &pose, utility::vector1< bool > allow_move_bb, core::Size jump_id) const protocols::enzdes::EnzdesBaseProtocol
setup_enzdes_constraints(core::pose::Pose &pose, bool allow_missing_remark_blocks) const protocols::enzdes::EnzdesBaseProtocol [protected]
setup_sequence_recovery_cache(core::pose::Pose &pose, core::pack::task::PackerTask const &task) const protocols::enzdes::EnzdesBaseProtocol
soft_scorefxn_protocols::ligand_docking::LigandBaseProtocol [protected]
start_from_random_rb_conf_protocols::enzdes::EnzdesFixBBProtocol [protected]
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Mover [inline, virtual]
type() const protocols::moves::Mover [inline]
type(const std::string &type_in)protocols::moves::Mover [inline]
unboundrot_protocols::ligand_docking::LigandBaseProtocol [protected]
use_soft_rep_protocols::ligand_docking::LigandBaseProtocol [protected]
~EnzdesFixBBProtocol()protocols::enzdes::EnzdesFixBBProtocol
~LigandBaseProtocol()protocols::ligand_docking::LigandBaseProtocol [virtual]
~Mover()protocols::moves::Mover [virtual]
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