Rosetta 3.4
protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure Member List
This is the complete list of members for protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure, including all inherited members.
apply(core::pose::Pose &more_cut, core::pose::Pose &less_cut)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [virtual]
apply(core::pose::Pose &more_cut)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [virtual]
best_fragment_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
best_score_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
bIdealLoopClosing() const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
bIdealLoopClosing_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
bKeepFragments_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
bQuickTest() const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline, protected]
bQuickTest_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
chainbreak_max_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
clear_info()protocols::moves::Mover [inline, virtual]
clone() const protocols::moves::Mover [virtual]
closure_fragments() const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
closure_fragments_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
determine_loop(core::pose::Pose const &more_cut, core::pose::Pose &less_cut)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
evaluator_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
filter_cst_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
filter_cst_weight_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
filter_score(core::pose::Pose &pose)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
Filters_map typedefprotocols::moves::Mover
fragments(core::fragment::FragSetCOP frags)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
fragset_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
fresh_instance() const protocols::moves::Mover [virtual]
generate_window_list(Size loop_size, WindowList &window_list) const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
get_additional_output()protocols::moves::Mover [virtual]
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Mover [inline]
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure [virtual]
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Mover [inline]
give_up_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure [protected]
info()protocols::moves::Mover [inline, virtual]
info() const protocols::moves::Mover [inline, virtual]
keep_fragments(bool setting=true)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
last_proposal_density_ratio()protocols::moves::Mover [inline, virtual]
loop_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
max_loop_size_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
min_breakout_fast_loops_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure [protected]
min_breakout_good_loops_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
min_fast_loops_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure [protected]
min_good_loops_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
min_loop_size_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
movemap() const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
movemap(core::kinematics::MoveMapCOP movemap)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
movemap_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
nr_scored_fragments_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure [protected]
nr_scored_sampling_passes_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure [protected]
operator=(Mover const &other)protocols::moves::Mover
output_debug_structure(core::pose::Pose &pose, std::string prefix)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Mover [virtual]
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
process_fragments(core::fragment::FrameList &frame_in, core::pose::Pose const &more_cut, core::pose::Pose const &loop_pose)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
register_options()protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure [static]
reinitialize_for_each_job() const protocols::moves::Mover [virtual]
reinitialize_for_new_input() const protocols::moves::Mover [virtual]
reset_status()protocols::moves::Mover
sample_loops(core::pose::Pose &more_cut, core::pose::Pose &less_cut)protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure [virtual]
score_delta_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
scored_frag_cycle_ratio(core::Real setting)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
scored_frag_cycle_ratio_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
scorefxn() const protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
scorefxn(core::scoring::ScoreFunctionOP sfxn)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
scorefxn_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
select_final_loop(core::pose::Pose &more_cut, core::pose::Pose &less_cut)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [virtual]
set_bIdealLoopClosing(bool setting)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
set_chainbreak_max(core::Real setting)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Mover [inline]
set_defaults()protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure [protected]
set_evaluation(evaluation::MetaPoseEvaluatorOP ev)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
set_input_pose(PoseCOP pose)protocols::moves::Mover [virtual]
set_last_move_status(MoverStatus status)protocols::moves::Mover [protected]
set_loop(Loop const &loop_in)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
set_native_pose(PoseCOP pose)protocols::moves::Mover [virtual]
setPoseExtraScores(core::pose::Pose &pose)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [static]
setup_frag_scorefxn(core::scoring::ScoreFunction &scorefxn)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
short_frag_cycle_ratio(core::Real setting)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [inline]
short_frag_cycle_ratio_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
SlidingWindowLoopClosure(core::fragment::FragSetCOP fragset, core::scoring::ScoreFunctionOP scorefxn, core::kinematics::MoveMapCOP movemap)protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
SlidingWindowLoopClosure()protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
ss_info_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Mover [inline, virtual]
type() const protocols::moves::Mover [inline]
type(const std::string &type_in)protocols::moves::Mover [inline]
vdw_delta_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
vdw_score_type_protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
WidthFirstSlidingWindowLoopClosure(core::fragment::FragSetCOP fragset, core::scoring::ScoreFunctionOP scorefxn, core::kinematics::MoveMapCOP movemap)protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
WidthFirstSlidingWindowLoopClosure()protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
window_acceptance_ratio_protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure [protected]
WindowList typedefprotocols::loops::loop_closure::ccd::SlidingWindowLoopClosure [protected]
~Mover()protocols::moves::Mover [virtual]
~SlidingWindowLoopClosure()protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines