Rosetta 3.4
Public Member Functions
protocols::dna::DnaInterfaceFinder Class Reference

#include <DnaInterfaceFinder.hh>

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List of all members.

Public Member Functions

 DnaInterfaceFinder (core::Real close_threshold=10 *10, core::Real contact_threshold=3.7 *3.7, core::Real z_cutoff=10., bool base_only=false)
virtual ~DnaInterfaceFinder ()
DnaInterfaceFinderOP clone () const
void determine_protein_interface (core::pose::Pose const &pose)
void determine_interface (core::pose::Pose const &pose, utility::vector1< core::Size > const &protein_positions, utility::vector1< core::Size > const &dna_positions)
void determine_protein_interface (core::pose::Pose const &pose, utility::vector1< core::Size > const &protein_positions, utility::vector1< core::Size > const &dna_positions)
void determine_dna_interface (core::pose::Pose const &pose, utility::vector1< core::Size > const &protein_positions, utility::vector1< core::Size > const &dna_positions)
bool initialized () const
DnaNeighbors const & protein_neighbors () const
DnaNeighbors const & dna_neighbors () const

Constructor & Destructor Documentation

protocols::dna::DnaInterfaceFinder::DnaInterfaceFinder ( core::Real  close_threshold = 10 * 10,
core::Real  contact_threshold = 3.7 * 3.7,
core::Real  z_cutoff = 10.,
bool  base_only = false 
) [inline]

Referenced by clone().

virtual protocols::dna::DnaInterfaceFinder::~DnaInterfaceFinder ( ) [inline, virtual]

Member Function Documentation

DnaInterfaceFinderOP protocols::dna::DnaInterfaceFinder::clone ( ) const [inline]

References DnaInterfaceFinder().

void protocols::dna::DnaInterfaceFinder::determine_dna_interface ( core::pose::Pose const &  pose,
utility::vector1< core::Size > const &  protein_positions,
utility::vector1< core::Size > const &  dna_positions 
)
void protocols::dna::DnaInterfaceFinder::determine_interface ( core::pose::Pose const &  pose,
utility::vector1< core::Size > const &  protein_positions,
utility::vector1< core::Size > const &  dna_positions 
)
void protocols::dna::DnaInterfaceFinder::determine_protein_interface ( core::pose::Pose const &  pose,
utility::vector1< core::Size > const &  protein_positions,
utility::vector1< core::Size > const &  dna_positions 
)
void protocols::dna::DnaInterfaceFinder::determine_protein_interface ( core::pose::Pose const &  pose)
DnaNeighbors const & protocols::dna::DnaInterfaceFinder::dna_neighbors ( ) const
bool protocols::dna::DnaInterfaceFinder::initialized ( ) const [inline]
DnaNeighbors const & protocols::dna::DnaInterfaceFinder::protein_neighbors ( ) const

The documentation for this class was generated from the following files:
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