Rosetta 3.4
Namespaces | Functions
src/protocols/branch_angle/BranchAngleOptimizer.cc File Reference
#include <protocols/branch_angle/BranchAngleOptimizer.hh>
#include <protocols/branch_angle/BranchCoef1.hh>
#include <protocols/branch_angle/BranchCoef2.hh>
#include <protocols/branch_angle/BranchParam1.hh>
#include <protocols/branch_angle/BranchParam2.hh>
#include <core/chemical/ResidueType.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/tree/Atom.hh>
#include <core/id/AtomID.hh>
#include <basic/database/open.hh>
#include <core/scoring/mm/MMBondAngleLibrary.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParam.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParamSet.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/scoring/ScoringManager.hh>
#include <basic/Tracer.hh>
#include <numeric/conversions.hh>
#include <numeric/NumericTraits.hh>
#include <numeric/xyz.functions.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/vector1.hh>
#include <core/kinematics/AtomTree.hh>

Namespaces

namespace  protocols
 

The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.


namespace  protocols::branch_angle

Functions

static basic::Tracer TR ("protocols.moves.branch_angle.BranchAngleOptimizer")
void protocols::branch_angle::branching_atomid1 (core::pose::Pose const &pose, core::id::AtomID main_atomid1, core::id::AtomID center_atomid, core::id::AtomID main_atomid2, core::id::AtomID &branch_atomid1)
 get all atoms bonded to another
void protocols::branch_angle::branching_atomids2 (core::pose::Pose const &pose, core::id::AtomID main_atomid1, core::id::AtomID center_atomid, core::id::AtomID main_atomid2, core::id::AtomID &branch_atomid1, core::id::AtomID &branch_atomid2)
 get 2 branching atoms ordered according their torsion offsets
void protocols::branch_angle::get_branching_atoms2 (core::kinematics::tree::Atom const *const main_atom2, core::kinematics::tree::Atom const *&branch_atom1, core::kinematics::tree::Atom const *&branch_atom2)
 get 2 siblings of an atom ordered according their torsion offsets

Function Documentation

static basic::Tracer TR ( "protocols.moves.branch_angle.BranchAngleOptimizer"  ) [static]
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