Rosetta 3.4
|
Classes | |
class | SetupForDensityScoringMover |
class | SetupForDensityScoringMoverCreator |
Typedefs | |
typedef utility::pointer::owning_ptr < SetupForDensityScoringMover > | SetupForDensityScoringMoverOP |
Functions | |
static basic::Tracer | TR ("protocols.electron_density.util") |
void | set_pose_and_scorefxn_for_edens_scoring (core::pose::Pose &pose, core::scoring::ScoreFunction &scorefxn) |
protocols::loops::Loops | findLoopFromPatterson (core::pose::Pose &pose, core::Size N, core::Size nloops, bool allow_termini) |
protocols::loops::Loops | findLoopFromDensity (core::pose::Pose &pose, core::Real frac, int max_helix_melt, int max_strand_melt) |
core::Real | dockPoseIntoMap (core::pose::Pose &pose, std::string align_in) |
core::Real | fastTransAlignPose (core::pose::Pose &pose) |
core::Real | fast2DRotAlignPose (core::pose::Pose &pose, std::string axis) |
typedef utility::pointer::owning_ptr< SetupForDensityScoringMover > protocols::electron_density::SetupForDensityScoringMoverOP |
core::Real protocols::electron_density::dockPoseIntoMap | ( | core::pose::Pose & | pose, |
std::string | align_in | ||
) |
References core::scoring::electron_density::add_dens_scores_from_cmdline_to_scorefxn(), core::scoring::elec_dens_fast, core::scoring::elec_dens_whole_structure_allatom, core::scoring::elec_dens_whole_structure_ca, core::scoring::elec_dens_window, fast2DRotAlignPose(), fastTransAlignPose(), core::pose::Pose::fold_tree(), core::kinematics::FoldTree::get_outgoing_edges(), core::kinematics::Jump::get_rotation(), core::scoring::electron_density::getDensityMap(), core::scoring::getScoreFunction(), core::conformation::symmetry::is_symmetric(), core::pose::symmetry::is_symmetric(), core::pose::Pose::jump(), core::pose::symmetry::make_symmetric_movemap(), core::scoring::patterson_cc, protocols::geometry::random_reorientation_matrix(), core::kinematics::FoldTree::root(), rot(), core::pose::Pose::set_jump(), core::kinematics::Jump::set_rotation(), and TR().
Referenced by protocols::electron_density::SetupForDensityScoringMover::apply().
core::Real protocols::electron_density::fast2DRotAlignPose | ( | core::pose::Pose & | pose, |
std::string | axis | ||
) |
core::Real protocols::electron_density::fastTransAlignPose | ( | core::pose::Pose & | pose | ) |
protocols::loops::Loops protocols::electron_density::findLoopFromDensity | ( | core::pose::Pose & | pose, |
core::Real | frac, | ||
int | max_helix_melt, | ||
int | max_strand_melt | ||
) |
References core::conformation::Residue::atom(), core::kinematics::FoldTree::cutpoints(), core::scoring::dssp::Dssp::dssp_reduced(), core::pose::Pose::fold_tree(), core::scoring::electron_density::getDensityMap(), core::kinematics::FoldTree::is_cutpoint(), core::conformation::Residue::is_polymer(), core::conformation::Residue::natoms(), protocols::loops::Loops::push_back(), core::pose::Pose::residue(), core::pose::Pose::total_residue(), and core::conformation::Atom::xyz().
protocols::loops::Loops protocols::electron_density::findLoopFromPatterson | ( | core::pose::Pose & | pose, |
core::Size | N, | ||
core::Size | nloops, | ||
bool | allow_termini | ||
) |
void protocols::electron_density::set_pose_and_scorefxn_for_edens_scoring | ( | core::pose::Pose & | pose, |
core::scoring::ScoreFunction & | scorefxn | ||
) |
static basic::Tracer protocols::electron_density::TR | ( | "protocols.electron_density.util" | ) | [static] |
Referenced by dockPoseIntoMap(), and fast2DRotAlignPose().