core::scoring::rna::RNA_ScoringInfo Class Reference

Keep track of RNA centroid, useful atom, base-base info inside the pose. More...

#include <RNA_ScoringInfo.hh>

Inheritance diagram for core::scoring::rna::RNA_ScoringInfo:

Collaboration diagram for core::scoring::rna::RNA_ScoringInfo:

List of all members.

Public Member Functions
	RNA_ScoringInfo ()
	RNA_ScoringInfo (RNA_ScoringInfo const &src)
basic::datacache::CacheableDataOP	clone () const
Size	size () const
bool	calculated () const
utility::vector1 < utility::vector1< Size > > const &	atom_numbers_for_vdw_calculation () const
utility::vector1 < utility::vector1< Size > > &	nonconst_atom_numbers_for_vdw_calculation ()
RNA_CentroidInfo &	rna_centroid_info ()
RNA_CentroidInfo const &	rna_centroid_info () const
rna::RNA_RawBaseBaseInfo &	rna_raw_base_base_info ()
rna::RNA_RawBaseBaseInfo const &	rna_raw_base_base_info () const
rna::RNA_FilteredBaseBaseInfo &	rna_filtered_base_base_info ()
rna::RNA_FilteredBaseBaseInfo const &	rna_filtered_base_base_info () const
rna::RNA_DataInfo &	rna_data_info ()
rna::RNA_DataInfo const &	rna_data_info () const

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Detailed Description

Keep track of RNA centroid, useful atom, base-base info inside the pose.

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Constructor & Destructor Documentation

core::scoring::rna::RNA_ScoringInfo::RNA_ScoringInfo

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Referenced by clone().

core::scoring::rna::RNA_ScoringInfo::RNA_ScoringInfo

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RNA_ScoringInfo const &

src

)

Copy constructors must copy all data, not just some...

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Member Function Documentation

utility::vector1< utility::vector1< Size > > const& core::scoring::rna::RNA_ScoringInfo::atom_numbers_for_vdw_calculation

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const [inline]

Referenced by core::scoring::rna::RNA_VDW_Energy::residue_pair_energy().

bool core::scoring::rna::RNA_ScoringInfo::calculated

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)

const [inline]

References core::scoring::rna::RNA_FilteredBaseBaseInfo::calculated(), core::scoring::rna::RNA_RawBaseBaseInfo::calculated(), and core::scoring::rna::RNA_CentroidInfo::calculated().

basic::datacache::CacheableDataOP core::scoring::rna::RNA_ScoringInfo::clone

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const [inline]

References RNA_ScoringInfo().

utility::vector1< utility::vector1< Size > >& core::scoring::rna::RNA_ScoringInfo::nonconst_atom_numbers_for_vdw_calculation

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)

[inline]

RNA_CentroidInfo& core::scoring::rna::RNA_ScoringInfo::rna_centroid_info

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)

[inline]

Referenced by protocols::rna::bases_are_coplanar(), core::scoring::rna::RNA_LowResolutionPotential::check_clear_for_stacking(), core::scoring::rna::RNA_LowResolutionPotential::check_forming_base_pair(), core::scoring::rna::RNA_FullAtomStackingEnergy::eval_atom_derivative(), core::scoring::rna::RG_Energy_RNA::eval_atom_derivative(), core::scoring::rna::RNA_LowResolutionPotential::eval_atom_derivative_base_base(), core::scoring::rna::RNA_LowResolutionPotential::eval_atom_derivative_rna_base_backbone(), protocols::rna::figure_out_base_pair_orientation(), core::scoring::rna::RNA_FullAtomStackingEnergy::finalize_total_energy(), core::scoring::rna::RG_Energy_RNA::finalize_total_energy(), core::scoring::rna::RNA_FullAtomStackingEnergy::setup_for_derivatives(), core::scoring::rna::RNA_FullAtomStackingEnergy::setup_for_scoring(), core::scoring::rna::RG_Energy_RNA::setup_for_scoring(), core::scoring::rna::RNA_LowResolutionPotential::update_rna_base_base_interactions(), and core::scoring::rna::RNA_LowResolutionPotential::update_rna_centroid_info().

RNA_CentroidInfo const& core::scoring::rna::RNA_ScoringInfo::rna_centroid_info

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const [inline]

rna::RNA_DataInfo const& core::scoring::rna::RNA_ScoringInfo::rna_data_info

(

)

const [inline]

rna::RNA_DataInfo& core::scoring::rna::RNA_ScoringInfo::rna_data_info

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)

[inline]

Referenced by core::scoring::rna::RNA_DataBackboneEnergy::eval_atom_derivative(), core::scoring::rna::RNA_PairwiseLowResolutionEnergy::finalize_total_energy(), and core::scoring::rna::RNA_DataBackboneEnergy::residue_pair_energy().

rna::RNA_FilteredBaseBaseInfo const& core::scoring::rna::RNA_ScoringInfo::rna_filtered_base_base_info

(

)

const [inline]

rna::RNA_FilteredBaseBaseInfo& core::scoring::rna::RNA_ScoringInfo::rna_filtered_base_base_info

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)

[inline]

Referenced by core::scoring::rna::RNA_LowResolutionPotential::eval_atom_derivative_base_base(), core::scoring::rna::RNA_PairwiseLowResolutionEnergy::finalize_total_energy(), core::scoring::rna::RNA_BaseBaseEnergy::finalize_total_energy(), protocols::rna::get_base_pairing_info(), core::scoring::rna::RNA_BaseBaseEnergy::setup_for_derivatives(), and core::scoring::rna::RNA_LowResolutionPotential::update_rna_base_pair_list().

rna::RNA_RawBaseBaseInfo& core::scoring::rna::RNA_ScoringInfo::rna_raw_base_base_info

(

)

[inline]

Referenced by core::scoring::rna::RNA_PairwiseLowResolutionEnergy::finalize_total_energy(), core::scoring::rna::RNA_BaseBaseEnergy::finalize_total_energy(), core::scoring::rna::RNA_PairwiseLowResolutionEnergy::setup_for_derivatives(), core::scoring::rna::RNA_BaseBaseEnergy::setup_for_derivatives(), core::scoring::rna::RNA_PairwiseLowResolutionEnergy::setup_for_packing(), core::scoring::rna::RNA_PairwiseLowResolutionEnergy::setup_for_scoring(), core::scoring::rna::RNA_LowResolutionPotential::update_rna_base_base_interactions(), and core::scoring::rna::RNA_LowResolutionPotential::update_rna_base_pair_list().

rna::RNA_RawBaseBaseInfo const& core::scoring::rna::RNA_ScoringInfo::rna_raw_base_base_info

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)

const [inline]

Size core::scoring::rna::RNA_ScoringInfo::size

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)

const [inline]

References core::scoring::rna::RNA_CentroidInfo::size().

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The documentation for this class was generated from the following files:

• src/core/scoring/rna/RNA_ScoringInfo.hh
• src/core/scoring/rna/RNA_ScoringInfo.cc