protocols::rbsegment_relax::RBSegment Class Reference

Rigid-body segments in a protein. More...

#include <RBSegment.hh>

Collaboration diagram for protocols::rbsegment_relax::RBSegment:

List of all members.

Public Member Functions
	RBSegment ()
	RBSegment (int seg_begin, int seg_end, RBSegmentType seg_type)
	construct a simple RB Segment
	RBSegment (RBResidueRange const &range_in)
	construct a simple RBSegment from an RB residue range
	RBSegment (int seg_begin, int seg_end, char type)
	construct a simple RB Segment
	RBSegment (utility::vector1< RBSegment > const &segs_in)
	construct a compound RBSegment from a vector of simple RBSegments
void	set_movement (core::Real sigAxisR, core::Real sigAxisT, core::Real sigOffAxisR=0.0, core::Real sigOffAxisT=0.0)
void	get_movement (core::Real &sigAxisR, core::Real &sigAxisT, core::Real &sigOffAxisR, core::Real &sigOffAxisT) const
RBSegment	remap (core::id::SequenceMapping const &mapping) const
core::Size	nContinuousSegments () const
bool	isEmpty () const
bool	isSimple () const
bool	isHelix () const
bool	isSheet () const
bool	isGenericRB () const
bool	isCompound () const
bool	initialized () const
core::Real	getSigAxisR () const
core::Real	getSigAxisT () const
core::Real	getSigOffAxisR () const
core::Real	getSigOffAxisT () const
RBResidueRange &	operator[] (int i)
RBResidueRange const &	operator[] (int i) const

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Detailed Description

Rigid-body segments in a protein.

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Constructor & Destructor Documentation

protocols::rbsegment_relax::RBSegment::RBSegment

(

)

[inline]

protocols::rbsegment_relax::RBSegment::RBSegment	(	int	seg_begin,
		int	seg_end,
		RBSegmentType	seg_type
	)		[inline]

construct a simple RB Segment

protocols::rbsegment_relax::RBSegment::RBSegment

(

RBResidueRange const &

range_in

)

[inline]

construct a simple RBSegment from an RB residue range

protocols::rbsegment_relax::RBSegment::RBSegment	(	int	seg_begin,
		int	seg_end,
		char	type
	)		[inline]

construct a simple RB Segment

References protocols::rbsegment_relax::RB_DEFAULT, protocols::rbsegment_relax::RB_HELIX, and protocols::rbsegment_relax::RB_SHEET.

protocols::rbsegment_relax::RBSegment::RBSegment

(

utility::vector1< RBSegment > const &

segs_in

)

construct a compound RBSegment from a vector of simple RBSegments

References protocols::rbsegment_relax::TR_seg().

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Member Function Documentation

void protocols::rbsegment_relax::RBSegment::get_movement	(	core::Real &	sigAxisR,
		core::Real &	sigAxisT,
		core::Real &	sigOffAxisR,
		core::Real &	sigOffAxisT
	)		const

Referenced by protocols::rbsegment_relax::RBSegmentMover::set_movement().

core::Real protocols::rbsegment_relax::RBSegment::getSigAxisR

(

)

const [inline]

core::Real protocols::rbsegment_relax::RBSegment::getSigAxisT

(

)

const [inline]

core::Real protocols::rbsegment_relax::RBSegment::getSigOffAxisR

(

)

const [inline]

core::Real protocols::rbsegment_relax::RBSegment::getSigOffAxisT

(

)

const [inline]

bool protocols::rbsegment_relax::RBSegment::initialized

(

)

const [inline]

bool protocols::rbsegment_relax::RBSegment::isCompound

(

)

const [inline]

References nContinuousSegments().

bool protocols::rbsegment_relax::RBSegment::isEmpty

(

)

const [inline]

References nContinuousSegments().

Referenced by protocols::rbsegment_relax::RB_lt::operator()().

bool protocols::rbsegment_relax::RBSegment::isGenericRB

(

)

const [inline]

References isSimple(), and protocols::rbsegment_relax::RB_DEFAULT.

bool protocols::rbsegment_relax::RBSegment::isHelix

(

)

const [inline]

References isSimple(), and protocols::rbsegment_relax::RB_HELIX.

bool protocols::rbsegment_relax::RBSegment::isSheet

(

)

const [inline]

References isSimple(), and protocols::rbsegment_relax::RB_SHEET.

bool protocols::rbsegment_relax::RBSegment::isSimple

(

)

const [inline]

References nContinuousSegments().

Referenced by isGenericRB(), isHelix(), and isSheet().

core::Size protocols::rbsegment_relax::RBSegment::nContinuousSegments

(

)

const [inline]

Referenced by isCompound(), isEmpty(), isSimple(), and protocols::rbsegment_relax::RBSegmentMover::print().

RBResidueRange& protocols::rbsegment_relax::RBSegment::operator[]

(

int

i

)

[inline]

RBResidueRange const& protocols::rbsegment_relax::RBSegment::operator[]

(

int

i

)

const [inline]

RBSegment protocols::rbsegment_relax::RBSegment::remap

(

core::id::SequenceMapping const &

mapping

)

const

References core::sequence::end, and protocols::rbsegment_relax::TR_seg().

Referenced by protocols::rbsegment_relax::remap_rb_segments().

void protocols::rbsegment_relax::RBSegment::set_movement	(	core::Real	sigAxisR,
		core::Real	sigAxisT,
		core::Real	sigOffAxisR = 0.0,
		core::Real	sigOffAxisT = 0.0
	)

References protocols::rbsegment_relax::TR_seg().

Referenced by protocols::rbsegment_relax::read_RBSegment_file().

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The documentation for this class was generated from the following files:

• src/protocols/rbsegment_relax/RBSegment.hh
• src/protocols/rbsegment_relax/RBSegment.cc