Rosetta 3.4
Namespace List
Here is a list of all namespaces with brief descriptions:
boost
boost::tuples
coreA class for defining atom parameters, known as atom_types
core::chemical
core::chemical::orbitals
core::chemical::rna
core::chemical::sdf
core::coarse
core::conformation
core::conformation::orbitals
core::conformation::RotamerSetCacheableDataType
core::conformation::signals
core::conformation::symmetry
core::fragment
core::fragment::picking_old
core::fragment::picking_old::concepts
core::fragment::picking_old::vall
core::fragment::picking_old::vall::eval
core::fragment::picking_old::vall::gen
core::fragment::picking_old::vall::scores
core::graph
core::grid
core::id
core::import_pose
core::import_pose::atom_tree_diffs
core::import_pose::pose_stream
core::io
core::io::pdb
core::io::PositionDdGInfo
core::io::raw_data
core::io::sequence_comparation
core::io::serialization
core::io::silent
core::kinematicsSee AtomTree overview and FoldTree overview for details
core::kinematics::tree
core::optimization
core::optimization::symmetry
core::pack
core::pack::annealer
core::pack::dunbrack
core::pack::interaction_graph
core::pack::rotamer_set
core::pack::rotamer_set::symmetry
core::pack::scmin
core::pack::task
core::pack::task::operation
core::pack::task::operation::util
core::pose
core::pose::datacache
core::pose::metrics
core::pose::metrics::simple_calculators
core::pose::signals
core::pose::symmetry
core::scoring
core::scoring::carbon_hbonds
core::scoring::constraints
core::scoring::custom_pair_distance
core::scoring::disulfides
core::scoring::dna
core::scoring::dssp
core::scoring::electron_density
core::scoring::electron_density::SplineInterp
core::scoring::electron_density_atomwise
core::scoring::EnergiesCacheableDataType
core::scoring::etable
core::scoring::etable::count_pair
core::scoring::etable::etrie
core::scoring::geometric_solvation
core::scoring::hackaro
core::scoring::hackelec
core::scoring::hbonds
core::scoring::hbonds::hbtrie
core::scoring::interface
core::scoring::methods
core::scoring::methods::dfire
core::scoring::mm
core::scoring::mm::mmtrie
core::scoring::nv
core::scoring::orbitals
core::scoring::packing
core::scoring::packstat
core::scoring::packstat::old
core::scoring::rna
core::scoring::saxs
core::scoring::sc
core::scoring::solid_surface
core::scoring::sym_e
core::scoring::symmetry
core::scoring::trie
core::sequence
core::util
dddm
make_table_of_pilot_apps
numericGeometric and mathematical utilities
ObjexxFCLA class for defining residue
ObjexxFCL::fmt
protcols
protcols::scoring
protcols::scoring::methods
protocolsThe instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP
protocols::abinitio
protocols::analysis
protocols::anchored_design
protocols::antibody
protocols::antibody2
protocols::backrub
protocols::boinc
protocols::boinc::watchdog
protocols::branch_angle
protocols::canonical_sampling
protocols::canonical_sampling::mc_convergence_checks
protocols::cartesian
protocols::checkpoint
protocols::cluster
protocols::coarse_rna
protocols::comparative_modeling
protocols::comparative_modeling::features
protocols::comparative_modeling::hybridize
protocols::constraints_additional
protocols::contact_map
protocols::ddg
protocols::ddG
protocols::dna
protocols::docking
protocols::docking::stateless
protocols::domain_assembly
protocols::electron_density
protocols::enzdes
protocols::enzdes::enzutil
protocols::evaluation
protocols::features
protocols::features::helixAssembly
protocols::fibril
protocols::filters
protocols::filters::sc
protocols::fldsgn
protocols::fldsgn::filters
protocols::fldsgn::potentials
protocols::fldsgn::potentials::sspot
protocols::fldsgn::topology
protocols::flexpack
protocols::flexpack::annealer
protocols::flexpack::interaction_graph
protocols::flexpack::rotamer_set
protocols::flexpep_docking
protocols::flxbb
protocols::forge
protocols::forge::build
protocols::forge::build::BuildInstructionState
protocols::forge::build::SegmentInsertConnectionScheme
protocols::forge::components
protocols::forge::components::VLB_VallMemoryUsage
protocols::forge::constraints
protocols::forge::methods
protocols::forge::remodel
protocols::frag_picker
protocols::frag_picker::nonlocal
protocols::frag_picker::quota
protocols::frag_picker::scores
protocols::frags
protocols::genetic_algorithm
protocols::geometry
protocols::hotspot_hashing
protocols::id
protocols::idealize
protocols::init
protocols::jd2
protocols::jd2::archive
protocols::jd2::JobInputterInputSource
protocols::jd2::parser
protocols::jobdist
protocols::jumping
protocols::kinmatch
protocols::ligand_docking
protocols::ligand_docking::ligand_options
protocols::ligand_docking::scoring_grid
protocols::loop_build
protocols::loophash
protocols::loops
protocols::loops::loop_closure
protocols::loops::loop_closure::ccd
protocols::loops::loop_closure::kinematic_closure
protocols::loops::loop_mover
protocols::loops::loop_mover::perturb
protocols::loops::loop_mover::refine
protocols::MakeRotLib
protocols::match
protocols::match::downstream
protocols::match::output
protocols::match::upstream
protocols::medal
protocols::motifs
protocols::moves
protocols::moves::mc_convergence_checks
protocols::mpi
protocols::multistate_design
protocols::noesy_assign
protocols::nonlocal
protocols::optimize_weights
protocols::pack_daemon
protocols::pmut_scan
protocols::pockets
protocols::protein_interface_design
protocols::protein_interface_design::filters
protocols::protein_interface_design::movers
protocols::qsar
protocols::qsar::scoring_grid
protocols::rbsegment_relax
protocols::relax
protocols::rigid
protocols::rna
protocols::rosetta_scripts
protocols::rotamer_recovery
protocols::RotamerDump
protocols::scoring
protocols::scoring::methods
protocols::scoring::methods::pcs
protocols::scoring::methods::pcs2
protocols::scoring::methods::saxs
protocols::seeded_abinitio
protocols::simple_filters
protocols::simple_moves
protocols::simple_moves::asym_fold_and_dock
protocols::simple_moves::rational_mc
protocols::simple_moves::sidechain_moves
protocols::simple_moves::symmetry
protocols::sparta
protocols::star
protocols::surface_docking
protocols::swa
protocols::swa::protein
protocols::swa::rna
protocols::symmetric_docking
protocols::toolbox
protocols::toolbox::match_enzdes_util
protocols::toolbox::pose_manipulation
protocols::toolbox::pose_metric_calculators
protocols::toolbox::rotamer_set_operations
protocols::toolbox::task_operations
protocols::topology_broker
protocols::topology_broker::weights
protocols::ub_e2c
protocols::unfolded_state_energy_calculator
protocols::viewer
protocols::viewer::graphics_states_param
protocols::vip
protocols::wum
stdObjexxFCL headers
utilityMiscellaneous I/O, portability, and algorithmic classes
utility::factoryA pluggable class factory system
utility::ioFile stream I/O classes, primarily for compressed data
utility::keysKeys and key-accessed containers for fast, safe object lookup
utility::optionsProgram options system
utility::pointer
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