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protocols::jd2::archive::NormalizedEvaluatedArchive Member List

This is the complete list of members for protocols::jd2::archive::NormalizedEvaluatedArchive, including all inherited members.

AbstractArchiveBase(ArchiveManagerAP ptr)protocols::jd2::archive::AbstractArchiveBaseinline
AbstractArchiveBase()protocols::jd2::archive::AbstractArchiveBaseinline
accepts_since_last_batch()protocols::jd2::archive::ArchiveBaseinline
accepts_since_last_batch() const protocols::jd2::archive::ArchiveBaseinline
activated_protocols::jd2::archive::NormalizedEvaluatedArchiveprivate
add_evaluated_structure(core::io::silent::SilentStructOP from_batch, Batch const &)protocols::jd2::archive::NormalizedEvaluatedArchivevirtual
add_evaluation(evaluation::PoseEvaluatorCOP, core::Real weight=0.0)protocols::jd2::archive::EvaluatedArchive
add_structure(core::io::silent::SilentStructOP from_batch, Batch const &)protocols::jd2::archive::EvaluatedArchivevirtual
add_structure_at_position(SilentStructs::iterator iss, core::io::silent::SilentStructOP new_decoy)protocols::jd2::archive::ArchiveBaseprotected
ArchiveBase(ArchiveManagerAP ptr=NULL)protocols::jd2::archive::ArchiveBase
const_decoy_iterator typedefprotocols::jd2::archive::ArchiveBaseprotected
count_removed_structures(core::Size n_removed)protocols::jd2::archive::ArchiveBaseprotected
count_structure(Batch const &batch, bool accepted)protocols::jd2::archive::ArchiveBaseprotectedvirtual
current_acceptance_ratio() const protocols::jd2::archive::ArchiveBaseinline
decoy_iterator typedefprotocols::jd2::archive::ArchiveBaseprotected
decoys() const protocols::jd2::archive::ArchiveBaseinline
decoys()protocols::jd2::archive::ArchiveBaseinline
determine_score_variations() const protocols::jd2::archive::NormalizedEvaluatedArchive
evaluate_local() const protocols::jd2::archive::EvaluatedArchiveinline
evaluate_silent_struct(core::io::silent::SilentStructOP from_batch) const protocols::jd2::archive::EvaluatedArchive
EvaluatedArchive(ArchiveManagerAP ptr)protocols::jd2::archive::EvaluatedArchive
EvaluatedArchive()protocols::jd2::archive::EvaluatedArchive
EvaluatorMap typedefprotocols::jd2::archive::EvaluatedArchive
evaluators() const protocols::jd2::archive::EvaluatedArchiveinline
finished() const protocols::jd2::archive::ArchiveBaseinlinevirtual
generate_batch()=0protocols::jd2::archive::ArchiveBasepure virtual
get_weight(std::string const &column) const protocols::jd2::archive::EvaluatedArchive
has_evaluator(std::string const &column)protocols::jd2::archive::EvaluatedArchive
idle()protocols::jd2::archive::ArchiveBaseinlinevirtual
init_from_decoy_set(core::io::silent::SilentFileData const &sfd)=0protocols::jd2::archive::EvaluatedArchivepure virtual
init_from_options()protocols::jd2::archive::NormalizedEvaluatedArchive
initialize()protocols::jd2::archive::NormalizedEvaluatedArchivevirtual
insertion_prob_protocols::jd2::archive::NormalizedEvaluatedArchiveprivate
invalidate_score_variations()protocols::jd2::archive::NormalizedEvaluatedArchiveinlineprotectedvirtual
is_start_zero_score(std::string const &) const protocols::jd2::archive::NormalizedEvaluatedArchiveprivate
keep_adding_to_statistics_protocols::jd2::archive::NormalizedEvaluatedArchiveprivate
lower_quartile_protocols::jd2::archive::NormalizedEvaluatedArchiveprivate
manager()protocols::jd2::archive::AbstractArchiveBaseinline
manager_ptr()protocols::jd2::archive::AbstractArchiveBaseinlineprotected
min_decoys_for_statistics_protocols::jd2::archive::NormalizedEvaluatedArchiveprivate
name() const protocols::jd2::archive::AbstractArchiveBaseinline
NormalizedEvaluatedArchive(ArchiveManagerAP ptr)protocols::jd2::archive::NormalizedEvaluatedArchive
NormalizedEvaluatedArchive()protocols::jd2::archive::NormalizedEvaluatedArchive
nstruct() const protocols::jd2::archive::ArchiveBaseinline
nstruct_for_statistics_protocols::jd2::archive::NormalizedEvaluatedArchiveprivate
options_registered_protocols::jd2::archive::NormalizedEvaluatedArchiveprivatestatic
Parent typedefprotocols::jd2::archive::NormalizedEvaluatedArchiveprivate
positive_scores_protocols::jd2::archive::NormalizedEvaluatedArchiveprivate
proposed_since_last_batch() const protocols::jd2::archive::ArchiveBaseinline
read_structures(core::io::silent::SilentFileData &, Batch const &batch)protocols::jd2::archive::EvaluatedArchivevirtual
register_options()protocols::jd2::archive::NormalizedEvaluatedArchivestatic
remove_evaluation(std::string const &column)protocols::jd2::archive::EvaluatedArchive
rescore()protocols::jd2::archive::NormalizedEvaluatedArchivevirtual
reset_accept_counter()protocols::jd2::archive::ArchiveBaseinline
restore_from_file()protocols::jd2::archive::NormalizedEvaluatedArchivevirtual
restore_status(std::istream &)protocols::jd2::archive::ArchiveBasevirtual
save_status(std::ostream &) const protocols::jd2::archive::ArchiveBasevirtual
save_to_file(std::string suffix="")protocols::jd2::archive::NormalizedEvaluatedArchivevirtual
score(core::pose::Pose &pose) const protocols::jd2::archive::EvaluatedArchiveprotectedvirtual
score_variation(std::string const &col) const protocols::jd2::archive::NormalizedEvaluatedArchivevirtual
score_variations() const protocols::jd2::archive::NormalizedEvaluatedArchivevirtual
score_variations_protocols::jd2::archive::NormalizedEvaluatedArchivemutableprivate
score_variations_are_clean_protocols::jd2::archive::NormalizedEvaluatedArchivemutableprivate
scorefxn() const protocols::jd2::archive::EvaluatedArchive
scorefxn_non_const()protocols::jd2::archive::EvaluatedArchiveprotected
select_score(core::io::silent::SilentStructOP evaluated_decoy)protocols::jd2::archive::EvaluatedArchive
set_evaluate_local(bool setting)protocols::jd2::archive::EvaluatedArchiveinline
set_evaluators(EvaluatorMap const &, WeightMap const &)protocols::jd2::archive::EvaluatedArchive
set_manager(ArchiveManagerAP manager)protocols::jd2::archive::AbstractArchiveBaseinlinevirtual
set_max_nstruct(core::Size setting)protocols::jd2::archive::ArchiveBaseinlineprotected
set_name(std::string const &set)protocols::jd2::archive::AbstractArchiveBaseinline
set_nstruct(core::Size set)protocols::jd2::archive::ArchiveBaseinline
set_scorefxn(core::scoring::ScoreFunctionOP scorefxn_)protocols::jd2::archive::EvaluatedArchive
set_weight(std::string const &column, core::Real weight)protocols::jd2::archive::EvaluatedArchive
set_weights(WeightMap const &setting)protocols::jd2::archive::EvaluatedArchive
setup_default_evaluators()protocols::jd2::archive::EvaluatedArchive
SilentStructs typedefprotocols::jd2::archive::ArchiveBaseprotected
SOURCE_FILEprotocols::jd2::archive::ArchiveBaseprotectedstatic
start_evaluation_timer() const protocols::jd2::archive::EvaluatedArchive
statistics_valid()protocols::jd2::archive::ArchiveBaseinline
still_interested(jd2::archive::Batch const &) const protocols::jd2::archive::AbstractArchiveBaseinlinevirtual
TAG_IN_FILEprotocols::jd2::archive::ArchiveBaseprotectedstatic
total_accepts()protocols::jd2::archive::ArchiveBaseinline
total_proposed()protocols::jd2::archive::ArchiveBaseinline
use_variance_archive_protocols::jd2::archive::NormalizedEvaluatedArchiveprivate
variance_archive_protocols::jd2::archive::NormalizedEvaluatedArchiveprivate
WeightMap typedefprotocols::jd2::archive::EvaluatedArchive
weights() const protocols::jd2::archive::EvaluatedArchiveinline
~AbstractArchiveBase()protocols::jd2::archive::AbstractArchiveBasevirtual
~ArchiveBase()protocols::jd2::archive::ArchiveBase
~EvaluatedArchive()protocols::jd2::archive::EvaluatedArchive
~NormalizedEvaluatedArchive()protocols::jd2::archive::NormalizedEvaluatedArchive