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ProfileScore.hh File Reference

FragmentScoringMethod forward declaration. More...

#include <core/types.hh>
#include <protocols/frag_picker/scores/ProfileScore.fwd.hh>
#include <protocols/frag_picker/scores/CachingScoringMethod.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.fwd.hh>
#include <core/sequence/SequenceProfile.hh>
#include <core/sequence/ScoringScheme.hh>
#include <utility/vector1.hh>

Classes

class  protocols::frag_picker::scores::ProfileScore
 a fragment candidate More...
 
class  protocols::frag_picker::scores::MakeProfileScore
 

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::frag_picker
 
 protocols::frag_picker::scores
 

Constant Groups

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::frag_picker
 
 protocols::frag_picker::scores
 

Detailed Description

FragmentScoringMethod forward declaration.

scores a fragment by L1 profile score

scores a fragment by weighting L1 profile distances by residue type

scores a fragment by Blosum62 profile score

scores a fragment by an amino acid sequence identity

Author
Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl)
Robert Vernon