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protocols::protein_interface_design::filters::RelativeSegmentFilter Class Reference

returns the residues aligned to a segment on the input pdb to the source pdb More...

#include <RelativeSegmentFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::RelativeSegmentFilter:
Inheritance graph
Collaboration diagram for protocols::protein_interface_design::filters::RelativeSegmentFilter:
Collaboration graph

Public Types

typedef core::Real Real
typedef core::Size Size

Public Member Functions

 RelativeSegmentFilter ()
bool apply (core::pose::Pose const &pose) const
 Returns true if the given pose passes the filter, false otherwise. More...
FilterOP clone () const
FilterOP fresh_instance () const
void report (std::ostream &out, core::pose::Pose const &pose) const
core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file More...
virtual ~RelativeSegmentFilter ()
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
std::string source_pose () const
void source_pose (std::string const s)
core::Size start_res () const
void start_res (core::Size const s)
core::Size stop_res () const
void stop_res (core::Size const s)
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 Filter (Filter const &)
virtual ~Filter ()
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void parse_my_tag (utility::tag::TagPtr const, moves::DataMap &, Filters_map const &, moves::Movers_map const &, core::pose::Pose const &)
virtual void apply (core::io::serialization::PipeMap &pmap)
virtual void score (core::io::serialization::PipeMap &pmap)
virtual core::Real score (core::pose::Pose &pose)
virtual void parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string name () const

Private Attributes

std::string source_pose_
core::Size start_res_
core::Size stop_res_

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Detailed Description

returns the residues aligned to a segment on the input pdb to the source pdb

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::RelativeSegmentFilter::RelativeSegmentFilter ( )

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::RelativeSegmentFilter::~RelativeSegmentFilter ( )

Member Function Documentation

bool protocols::protein_interface_design::filters::RelativeSegmentFilter::apply ( core::pose::Pose const &  pose) const
FilterOP protocols::protein_interface_design::filters::RelativeSegmentFilter::clone ( ) const
FilterOP protocols::protein_interface_design::filters::RelativeSegmentFilter::fresh_instance ( ) const
void protocols::protein_interface_design::filters::RelativeSegmentFilter::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap ,
filters::Filters_map const &  ,
protocols::moves::Movers_map const &  ,
core::pose::Pose const &  pose 
void protocols::protein_interface_design::filters::RelativeSegmentFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const

Reimplemented from protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::RelativeSegmentFilter::report_sm ( core::pose::Pose const &  ) const

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

std::string protocols::protein_interface_design::filters::RelativeSegmentFilter::source_pose ( ) const

References source_pose_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::source_pose ( std::string const  s)

References source_pose_.

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::start_res ( ) const

References start_res_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::start_res ( core::Size const  s)

References start_res_.

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::stop_res ( ) const

References stop_res_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::stop_res ( core::Size const  s)

References stop_res_.

Member Data Documentation

std::string protocols::protein_interface_design::filters::RelativeSegmentFilter::source_pose_

Referenced by apply(), and source_pose().

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::start_res_

Referenced by start_res().

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::stop_res_

Referenced by stop_res().

The documentation for this class was generated from the following files: