protocols::protein_interface_design::filters::RelativeSegmentFilter Class Reference

returns the residues aligned to a segment on the input pdb to the source pdb More...

#include <RelativeSegmentFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::RelativeSegmentFilter:

Collaboration diagram for protocols::protein_interface_design::filters::RelativeSegmentFilter:

Public Types
typedef core::Real	Real
typedef core::Size	Size

Public Member Functions
	RelativeSegmentFilter ()
bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
FilterOP	clone () const
FilterOP	fresh_instance () const
void	report (std::ostream &out, core::pose::Pose const &pose) const
core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual	~RelativeSegmentFilter ()
void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
std::string	source_pose () const
void	source_pose (std::string const s)
core::Size	start_res () const
void	start_res (core::Size const s)
core::Size	stop_res () const
void	stop_res (core::Size const s)
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	parse_my_tag (utility::tag::TagPtr const, moves::DataMap &, Filters_map const &, moves::Movers_map const &, core::pose::Pose const &)
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Attributes
std::string	source_pose_
core::Size	start_res_
core::Size	stop_res_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

returns the residues aligned to a segment on the input pdb to the source pdb

Member Typedef Documentation

typedef core::Real protocols::protein_interface_design::filters::RelativeSegmentFilter::Real

typedef core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::Size

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::RelativeSegmentFilter::RelativeSegmentFilter ( )

inline

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::RelativeSegmentFilter::~RelativeSegmentFilter ( )

virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::RelativeSegmentFilter::apply ( core::pose::Pose const &  pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References protocols::rosetta_scripts::find_nearest_res(), core::import_pose::pose_from_pdb(), source_pose(), source_pose_, start_res(), stop_res(), and protocols::protein_interface_design::filters::TR().

FilterOP protocols::protein_interface_design::filters::RelativeSegmentFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References RelativeSegmentFilter().

FilterOP protocols::protein_interface_design::filters::RelativeSegmentFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References RelativeSegmentFilter().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	,
		filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &	pose
	)

References source_pose(), start_res(), stop_res(), core::pose::Pose::total_residue(), and protocols::protein_interface_design::filters::TR().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::RelativeSegmentFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

std::string protocols::protein_interface_design::filters::RelativeSegmentFilter::source_pose ( ) const

inline

References source_pose_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::source_pose ( std::string const  s)

inline

References source_pose_.

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::start_res ( ) const

inline

References start_res_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::start_res ( core::Size const  s)

inline

References start_res_.

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::stop_res ( ) const

inline

References stop_res_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativeSegmentFilter::stop_res ( core::Size const  s)

inline

References stop_res_.

Member Data Documentation

std::string protocols::protein_interface_design::filters::RelativeSegmentFilter::source_pose_

private

Referenced by apply(), and source_pose().

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::start_res_

private

Referenced by start_res().

core::Size protocols::protein_interface_design::filters::RelativeSegmentFilter::stop_res_

private

Referenced by stop_res().

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/RelativeSegmentFilter.hh
• src/protocols/protein_interface_design/filters/RelativeSegmentFilter.cc