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Public Member Functions | Public Attributes | List of all members
protocols::forge::remodel::RemodelData Class Reference

#include <RemodelData.hh>

Collaboration diagram for protocols::forge::remodel::RemodelData:
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Public Member Functions

 RemodelData ()
 
void translateDSSP_ABEGO (std::string &ss, std::string &abego)
 
void getLoopsToBuildFromFile (std::string filename)
 
void splitString (std::string str, std::string delim, std::vector< std::string > &results)
 
void updateWithDsspAssignment (ObjexxFCL::FArray1D_char &dsspSS)
 
void collectInsertionPose ()
 

Public Attributes

protocols::loops::Loops loops_to_build
 
std::string sequence
 
std::string ss
 
std::string abego
 
std::string dssp_updated_ss
 
bool has_design_info_
 
int pdb_start
 
int pdb_stop
 
int design_mode
 
bool auto_design
 
bool design_neighbor
 
core::kinematics::MoveMap natro_movemap_
 
std::vector
< protocols::forge::remodel::LineObject
blueprint
 
std::vector< core::SizedisulfMobileRange
 
std::vector< core::SizedisulfLandingRange
 
std::string parsed_string_for_resfile
 
core::pose::Pose insertPose
 
int insertionSize
 
std::string insertionSS
 
float total_chain_break_score
 

Constructor & Destructor Documentation

protocols::forge::remodel::RemodelData::RemodelData ( )

Member Function Documentation

void protocols::forge::remodel::RemodelData::collectInsertionPose ( )
void protocols::forge::remodel::RemodelData::getLoopsToBuildFromFile ( std::string  filename)
void protocols::forge::remodel::RemodelData::splitString ( std::string  str,
std::string  delim,
std::vector< std::string > &  results 
)
void protocols::forge::remodel::RemodelData::translateDSSP_ABEGO ( std::string &  ss,
std::string &  abego 
)
void protocols::forge::remodel::RemodelData::updateWithDsspAssignment ( ObjexxFCL::FArray1D_char &  dsspSS)

Member Data Documentation

std::string protocols::forge::remodel::RemodelData::abego
bool protocols::forge::remodel::RemodelData::auto_design
std::vector<protocols::forge::remodel::LineObject> protocols::forge::remodel::RemodelData::blueprint
int protocols::forge::remodel::RemodelData::design_mode
bool protocols::forge::remodel::RemodelData::design_neighbor
std::vector<core::Size> protocols::forge::remodel::RemodelData::disulfLandingRange
std::vector<core::Size> protocols::forge::remodel::RemodelData::disulfMobileRange
std::string protocols::forge::remodel::RemodelData::dssp_updated_ss
bool protocols::forge::remodel::RemodelData::has_design_info_
int protocols::forge::remodel::RemodelData::insertionSize
std::string protocols::forge::remodel::RemodelData::insertionSS
core::pose::Pose protocols::forge::remodel::RemodelData::insertPose
protocols::loops::Loops protocols::forge::remodel::RemodelData::loops_to_build
core::kinematics::MoveMap protocols::forge::remodel::RemodelData::natro_movemap_
std::string protocols::forge::remodel::RemodelData::parsed_string_for_resfile
int protocols::forge::remodel::RemodelData::pdb_start
int protocols::forge::remodel::RemodelData::pdb_stop
std::string protocols::forge::remodel::RemodelData::sequence
std::string protocols::forge::remodel::RemodelData::ss
float protocols::forge::remodel::RemodelData::total_chain_break_score

The documentation for this class was generated from the following files: