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protocols::cluster Namespace Reference

Classes

class  Exemplar
 Data structure for one similarity measurement (s_ik) for affinity propagation clustering. More...
 
class  DataPoint
 Data structure for one input data point for affinity propagation clustering. More...
 
class  APCluster
 Public interface for doing affinity propagation clustering. More...
 
class  GatherPosesMover
 
class  EnsembleConstraints
 
class  EnsembleConstraints_Simple
 
struct  Cluster
 
class  ClusterBase
 
class  ClusterPhilStyle
 
class  ClusterPhilStyle_Loop
 
class  AssignToClustersMover
 

Typedefs

typedef
utility::pointer::owning_ptr
< APCluster
APClusterOP
 
typedef
utility::pointer::owning_ptr
< APCluster const > 
APClusterCOP
 
typedef
utility::pointer::owning_ptr
< GatherPosesMover
GatherPosesMoverOP
 
typedef
utility::pointer::owning_ptr
< GatherPosesMover const > 
GatherPosesMoverCOP
 
typedef
utility::pointer::owning_ptr
< EnsembleConstraints
EnsembleConstraintsOP
 
typedef
utility::pointer::owning_ptr
< EnsembleConstraints const > 
EnsembleConstraintsCOP
 
typedef
utility::pointer::owning_ptr
< EnsembleConstraints_Simple
EnsembleConstraints_SimpleOP
 
typedef
utility::pointer::owning_ptr
< EnsembleConstraints_Simple
const > 
EnsembleConstraints_SimpleCOP
 
typedef
utility::pointer::owning_ptr
< ClusterBase
ClusterBaseOP
 
typedef
utility::pointer::owning_ptr
< ClusterBase const > 
ClusterBaseCOP
 
typedef
utility::pointer::owning_ptr
< ClusterPhilStyle
ClusterPhilStyleOP
 
typedef
utility::pointer::owning_ptr
< ClusterPhilStyle const > 
ClusterPhilStyleCOP
 
typedef
utility::pointer::owning_ptr
< AssignToClustersMover
AssignToClustersMoverOP
 
typedef
utility::pointer::owning_ptr
< AssignToClustersMover const > 
AssignToClustersMoverCOP
 

Functions

template<typename T >
void write1 (FILE *f, T t)
 
template<typename T >
void read1 (FILE *f, T &t)
 
static basic::Tracer tr ("protocols.cluster")
 
static
numeric::random::RandomGenerator 
RG (42032)
 
std::map< std::string, core::Realread_template_scores (const std::string filename)
 
bool compareIndexEnergyPair (const std::pair< int, Real > &p1, const std::pair< int, Real > &p2)
 

Typedef Documentation

Function Documentation

bool protocols::cluster::compareIndexEnergyPair ( const std::pair< int, Real > &  p1,
const std::pair< int, Real > &  p2 
)
template<typename T >
void protocols::cluster::read1 ( FILE *  f,
T &  t 
)
inline
std::map< std::string, core::Real > protocols::cluster::read_template_scores ( const std::string  filename)
static numeric::random::RandomGenerator protocols::cluster::RG ( 42032  )
static
static basic::Tracer protocols::cluster::tr ( "protocols.cluster"  )
static
template<typename T >
void protocols::cluster::write1 ( FILE *  f,
t 
)
inline